36 datasets found

Sequencing of several clinical isolates of different species

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

The important role of mice as a model in research of microbe host interactions increased the need for determining the limits of such experiments due to host specificity and...

Metagenomes containing bacteria from positive blood culture broths in patients with sepsis

Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project...

Multi-drug resistant gram negative bacteria (also known as “Superbugs”) are causing infections in vulnerable patients in hospitals around the world. Much of the clinically...

Whole genome sequencing of cultured research organisms as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

WGS of bacterial isolates from Natural Cat Food Diets

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia

Miscellaneous bacterial isolates collected at six regional referral hospitals in Tanzania in 2020-2021. The "ESKAPE pathogen" isolates from this project were published in...

Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab

Vibrio parahaemolyticus isolated from shrimp pond

Whole genome analysis of multidrug-resistant, extended-spectrum beta-lactamase-producing bacteria isolated from dogs

The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden...

The aim of the proposed research is to define the nature and frequency of transfer of antimicrobial resistance (AMR) genes between pathogenic and commensal bacteria within their...