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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
Bacterial WGS validation panel
The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting... -
Metagenomic analysis of the digestive tract associated Microbiota of wild sea...
Fastq files of illumina fastq from Next generation sequencing of sea urchin (Tripneustes gratilla) gut samples -
Salmonella_enterica_ancient_DNA_and_modern_demography
The project investigated the demography of Salmonella enterica, building on a large collection of diverse S.enterica from animals and the environment to provide context for... -
Bacterial isolates from Natural Cat Food Diets
WGS of bacterial isolates from Natural Cat Food Diets -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Vibrio parahaemolyticus Genome sequencing and assembly
We isolated and sequenced five V. parahaemolyticus strains with different virulence level to identify the key virulent determinants that remarkably affected the pathogenicty. -
Antibacterial resistance in Lebanon
Sequences of Gram-negative pathogens of clinical samples in Lebanon and the MENA region -
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Ultra-deep, long-read nanopore sequencing of mock microbial community standards -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Evaluating Nanopore-based bacterial variant calling
Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground... -
Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support... -
Single laboratory evaluation of the (Q20+) nanopore sequencing kit for bacter...
This study aimed to evaluate the potential of Oxford Nanopore Technologies (ONT) GridION with R10.4.1 flow cells and associated library chemistry as a rapid and accurate method... -
Microbial community structure in the central Arctic Ocean
Bacterial and Archaeal community structure in the central Arctic Ocean -
ATCC genome sequencing
This project involved sequencing some bacterial isolates from ATCC (https://www.atcc.org) to test ONT-only analysis methods. -
Exemplary sequences of human outbreak strains from the Danish surveillance of...
Exemplary sequences of human outbreak strains from the Danish surveillance of foodborne bacterial pathogens e.g. Salmonella, STEC, Listeria -
BactID
Bacterial identification run in house at UCLA -
Multiplex transcriptional characterizations across diverse and hybrid bacteri...
Cell-free expression systems enable rapid prototyping of genetic programs in vitro. However, current throughput of cell-free measurements is often limited by the use of... -
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bac...
Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in...
