35 datasets found

Raw paired end sequencing data of transcription factor binding, measured via ChEC-seq.</p><p>The binding of transcriptions factors Ace2, Swi5, Fkh1 and Fkh2 were...

Changes in gene regulation rapidly accumulate between species and may contribute to reproductive isolation through misexpression of genes in interspecific hybrids. Hybrid...

This project uses multiple high-throughput sequencing approaches to map the transcript start and end boundaries and identify conserved and novel upstream open reading frames in...

S. cerevisiae strain variation 2

The expression data includes 20 replicates of a yeast hybrid (YPS128/RM11-1a) and 10 replicates of the co-culture of diploid YPS128 and RM11-1a strain in a lab condition. The...

It is commonly, although not universally, accepted that most intra- and inter-specific genome sequence variations are more or less neutral, whereas a large fraction of...

Genome sequencing of multiple lineages from the Saccharomyces genus

Oxford Nanopore long-read whole-genome sequencing of parental strains and evolved lines from an evolution experiment performed on laboratory hybrids from crosses between...

Nanopore (ONT) Long Read Sequence data for synthetic chromosomes generated during this project and also reference strains.

Here, we analyzed 76 ecologically diverse wild yeast isolates and discovered a wide diversity of replicative lifespan. Phylogenetic analyses pointed to genes and environmental...

We determined nucleosome positions genome-wide in diploid Saccharomyces species undergoing early stages of synchronous meiosis. This study sought to assess if meiotic DNA...

Background: Recent studies have demonstrated that antisense transcription is pervasive in budding yeasts and is conserved between Saccharomyces cerevisiae and S. paradoxus....

We sequenced both the stable (WT) and unstable (rrp6delta) transcriptomes of three S.cerevisiae strains: S288c, S1278b, JAY291 and the S.paradoxus strain N17 for de novo...

The goals of this study are to compare evolutionary differences in mRNA abundance and translation efficiency in yeast. Ribosome profiling in S. cerevisiae, S. paradoxus, and an...

We used ribosome profiling sequencing on wild S. paradoxus or S. cerevisiae strains to explore the evolution of translated small ORFs, which arise from previously non-genic...