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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
Conventional wisdom holds that PCR amplification for sequencing should employ pooled replicate reactions to reduce bias due to jackpot effects and chimera formation. However,... -
Human oral microbiome of Spanish adolescents
We provide a snapshot of the adolescent oral microbiome throughout Spain and how it varies with life-style and other factors. -
The change of oral microbiome caused by the fixed orthodontic appliances
The goal of this project was to evaluate the changes of oral microbiome caused by the fixed orthodontic appliances. -
Parfrey_euk_testing_samples_515_1119
Comparison of different sample types using different primers and platforms -
Single-cell and aggregates using a droplet based micro-fluidic device Metagenome
The sample sequences are recovered from three distinct environments: single-cell enrichments for sea-water cell amplification, aggregates of cells from deep-sea sediments and... -
Paediatric Oral Microbiome
Antibiotic overuse has promoted the spread of antimicrobial resistance (AMR) with significant health and economic consequences. Surveillance of resistance reservoirs, like the... -
Buccal and gingival microbiota of children with type 1 diabetes
Study cohort consists of children with type 1 diabetes. Each subject had a swab collected from the right buccal mucosa and the bucco-gingival margin of the lower left permanent... -
EFFECT OF HIV INFECTION ON SALIVA MICROBIOTA AND ITS MODULATION WITH PREBIOTICS
The aim of this study was to characterize the saliva microbiota from HIV subjects and the effect of a prebiotic administration.A cohort of HIV viremic untreated patients,... -
Oral microbiome in Periodontitis patients with Alzheimer's disease
Oral microbiome of Buccal, Supragingival and Subgingival plaque in Periodontitis patients with Alzheimer's disease -
EFFECTS OF SODIUM FLUORIDE OVER ORAL BACTERIAL BIOFILMS COMPOSITION AND ACTIVITY
It is well established that fluoride increases enamel resistance to acidic pH and promotes remineralization but its effect on bacterial composition and metabolism is not fully... -
Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene...
A comparison of non-targeted (shotgun metagenomics) sequencing methods and targeted amplicon methods for the characterization of ancient human oral microbiomes. -
Microbiota of periodontally healthy and diseased patients in Korea
To identify microbiome markers for the periodontitis, metagenomic data were obtained from two different oral sites, buccal and supragingival -
Oral microbiome in adult Down Syndrome individuals Raw sequence reads
Subgingival microbial changes in adult Down Syndrome individuals with peridontitis after chlorhexidine adjunct non-surgical therapy -
Oral microbiome in implant screw hole, implant sulcus, and supragingival samp...
Oral microbiome in implant screw hole, implant sulcus, and supragingival samples from healthy subjects -
Parfrey_euk_testing_samples_515_806
Comparison of different sample types using different primers and platforms -
Microbiota of periodontally diseased patients with hypertension in Korea
To profile microbiome for the periodontitis patients with hypertension in two different oral sites, buccal and supragingival regions -
American Gut Project
The American Gut project is the largest crowdsourced citizen science project to date. Fecal, oral, skin, and other body site samples collected from thousands of participants... -
Performance Comparison between MiSeq and HiSeq 2500 for Microbiome study
Oral samples were collected to compare performance between MiSeq and HiSeq 2500 -
Knight skin biogeography comparison
Knight_skin_biogeography - Comparison of skin samples from a rat (mammal), cyclostomid (fish), iguana (reptile), bull frog (amphibian) and a bird (pigeon) to determine if the... -
LoopSeq paper
LoopSeq assembled 16S amplicons using Illumina PE reads
