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WH_metagenome
Water hyacinth metagenomic reads -
Linked machine learning models improve species classification of fungi when u...
The increased usage of long read sequencing has not been matched with publicly available databases suited for error-prone long reads when applied to metabarcodes. We address... -
Investigation of duckweed microbial communities
Investigation of duckweed microbial communities in natural and stress condition using V3V4 16S rRNA sequencing -
Hydroponic/ Aquaponic microbiome
Hydroponic Cropping Systems (HCS) including hydroponics and aquaponics are becoming increasingly popular as a solution to address global food security. Plants are grown... -
Bacterial diversity and community structure continuum analysis of rhizosphere...
We investigated the bacterial community structure of three different compartments such as rhizosphere, pneumatophore and bulk soils in marine sediments. -
Diversity of symbiotic cyanobacteria in cycad coralloid roots using a short-r...
Cycads are the only gymnosperms forming a symbiosis with nitrogen fixing cyanobacteria, inhabiting a specialized organ: the coralloid roots. Our research investigates the... -
Duckweed hosts a taxonomically reduced bacterial assemblage.
Culture-independent characterization of microbial communities associated with popular plant model systems have increased our understanding of the plant microbiome. However, the... -
Nypa worm Namalycastis sp. Raw sequence reads
Nypa worm Namalycastis sp. gut and environment sample related bacterial community -
plant metagenome Raw sequence reads
Original sequence of nodule endophytic fungi treated with aluminum -
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
Conventional wisdom holds that PCR amplification for sequencing should employ pooled replicate reactions to reduce bias due to jackpot effects and chimera formation. However,... -
study of microbial diversity in plant or water
Objective to investigate differences of microbial diversity between plant and water -
Giant Kelp Microbiome Altered in the Presence of Epiphytes - 2018
We conducted field surveys in which we sampled seawater and the epibiotic microbial communities of kelp laminae at two kelp beds in the Santa Barbara Channel. We used... -
Temperate coastal plant database for chloroplast loci
Generation of a genomic database for temperate coastal plants. Database consists of chloroplast loci that were isolated through target enrichment sequencing using the... -
ITS metabarcoding Issakka forest
DNA was extracted from 11 fungal species, DNA metabarcoding using the gITS7 and ITS4 primers, amplicons normalised and paired-end sequenced on Illumina Miseq (2 *300 bp). The... -
Arsenic contamination affects bacterial community composition and predicted A...
Significant advances have been achieved in our understanding of the physiological processes that are affected by As exposure in aquatic environment. However, the mechanisms... -
Investigation of duckweed microbial communities
Investigation of duckweed (Landotia punctata) microbial communities using 16S metagenomic sequencing.</p><p>L. punctata growing in natural and nutrient-deficient... -
Nitrogen cycling genes in tropical corals (Porites cylindrica ).
The study measured the activity and diversity of nitrogen cycling enzymes in tropical corals. -
Fungal communities in Antarctica
A comprehensive assessment of fungal communities in various habitats from Antarctica: diversity, distribution, and potential pathogens -
Virome characterization of fungal isolate collection
Virome characterization of fungal isolate collection, which includes ericoid and orchid mycorrhizal fungal species. -
A whole-watershed microbiome reveals a cross-biome role in symbiont sources a...
In this study we map microbial distributions within a small, natural watershed in order to examine source-sink dynamics of symbiotic microbes at the landscape scale, among...