41 datasets found

We have developed a percutaneous infection model with zebrafish (Dani rerio) and analyzed skin bacterial floras during the infection. The fish were given the combination of the...

Microbial communities associated with the skin, gill, and gut of large yellow croaker

Here, we present a new method called RIMS-seq (Rapid Identification of Methylase Specificity) to simultaneously sequence bacterial genomes and determine m5C methylase...

The microbial communities of larval sablefish (Anoplopoma fimbria) reared in traditional "greenwater" vs. those reared in "claywater," an emerging alternative to greenwater,...

Marine animals host diverse microbial communities on their skin that could play a major role for their health. Most inventories of marine animals skin microbiomes have focused...

Knight_skin_biogeography - Comparison of skin samples from a rat (mammal), cyclostomid (fish), iguana (reptile), bull frog (amphibian) and a bird (pigeon) to determine if the...

Massively parallel high throughput sequencing technology to extract hyper variable region using NGS short read platform

One plate of samples was extracted using several different extraction tools (new, faster) for comparison with the existing pipeline

Identifying the microbiome of goldfish microbiomes and how they are changed by sublethal nitrite exposure.

This project study the acclimation dynamics of the sea cucumber skin microbiome after induced stress from handling and transportation. Sea cucumber species Holothuria scabra...

Hydroponic Cropping Systems (HCS) including hydroponics and aquaponics are becoming increasingly popular as a solution to address global food security. Plants are grown...

metagenome data for gut microbiota, seawater samples (costal seawater, inlet seawater, rearing tank seawater, outlet seawater)

Due to changes in the environment, the population of crocodile lizard is decreasing rapidly.In order to better protect the crocodile lizard, we studied the skin...

Sequencing reads for V3-V4 and V4 regions of the 16S rRNA amplicon for fecal samples and spiked water and soil samples. Samples were sequenced for a microbial source tracking...

Analysis of bacterial communities from the skin of Sierra Nevada yellow-legged frogs (R. sierrae) and surrounding environment, with the goal of understanding interactions with...

Viromes were collected from the skin surfaces of three shark species (tiger, dusky, and galapogos sharks) around Norfolk Island. The project will investigate skin surface virome...

Outbreaks of diseases in farmed fish remain a recurring problem, despite the development of vaccines and improved hygiene standards on aquaculture farms. One commonly observed...

method construction

Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial...

Exploration of the skin microbiome from axolotl species employing Illumina amplicon 16S rRNA gene sequencing.