61 datasets found

Fastq files of illumina fastq from Next generation sequencing of sea urchin (Tripneustes gratilla) gut samples

WGS of bacterial isolates from Natural Cat Food Diets

We isolated and sequenced five V. parahaemolyticus strains with different virulence level to identify the key virulent determinants that remarkably affected the pathogenicty.

Ultra-deep, long-read nanopore sequencing of mock microbial community standards

Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground...

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

This study aimed to evaluate the potential of Oxford Nanopore Technologies (ONT) GridION with R10.4.1 flow cells and associated library chemistry as a rapid and accurate method...

Bacterial identification run in house at UCLA

Cell-free expression systems enable rapid prototyping of genetic programs in vitro. However, current throughput of cell-free measurements is often limited by the use of...

Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia

Species and metagenomic samples used for the FELIX (Finding Engineering-Linked Indicators) project.

Five foodborne pathogens were sequenced using the iSeq100, MiSeq, and MinION. Each set of reads was assembled independently and in combination to compare genome assembly quality...

Miscellaneous bacterial isolates collected at six regional referral hospitals in Tanzania in 2020-2021. The "ESKAPE pathogen" isolates from this project were published in...

Vibrio parahaemolyticus isolated from shrimp pond

The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden...

http://www.sanger.ac.uk/resources/downloads/bacteria/ This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the...

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Comparative genome studies of these bacteria.

Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially...

In the context of global bacterial pathogen surveillance, it is crucial to ensure interoperability and harmonized data. Several systems are currently implemented for such...