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Supplementary tables to manuscript: “Metagenomic analysis of virome cross-tal...
Supplementary tables to manuscript in Chapter 4. -
Genotyping data in 4 related mapping populations of lucerne (Medicago sativa)
Four crosses between four individual parental plants (CA2, CA7, MA1,MA7) have been studied. Each individual parental plant has been crossed with two other parental plants. The... -
1D 1H-NMR metabolomics of tomato fruit pericarp of gbp1-c mutants and Wild Type
1D 1H-NMR metabolomic profiling of 15 DPA, 20 DPA, 25 DPA and Breaker fruit pericarp from the WT, gbp1-c4 and gbp1-c8 independent mutant lines of tomato. -
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as... -
Impact of feeding strategies on young rabbit and its gut microbiota
You will find all the datasets presented in the study of Paës et al, "Establishment of hindgut bacterial ecosystems and acquisition of microbial functions in the infant rabbit:... -
Genotypic data and genetic map for Syrah x Grenache bi-parental grapevine pop...
This dataset, intended for QTL detection and genomic prediction, includes : 1) the SNP genotyping data, in vcf format, obtained by GBS in a grapevine bi-parental population, and... -
A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Dia...
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole,... -
Impact of oxidative stress (H2O2) on Pseudomonas Graminis - NMR dataset
Impact of atmospheric stresses on clouds microorganisms metabolism: the case of H2O2 : The dataset contains 32 files created from 500MHz NMR spectrometer and cdf files created... -
Environmental conditions modulate the protein content and immunomodulatory ac...
Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory... -
Genome assembly and annotation of Plasmopara muralis, the downy mildew pathog...
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus... -
Data associated to the paper "A genomic map of climate adaptation in Mediterr...
This dataset consists of genotypes of 640 animals for 39921 variants (SNPs). Animals belong to 21 Mediterranean cattle populations. The compressed archive contains two files (in... -
Statistical analysis scripts to analyze metabarcoding data of fungal communit...
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar... -
Protocole de dépôt en open-access des données de séquençage sur une plateform...
La qualité écologique des milieux aquatiques est contrôlée avec une large palette d’outils normalisés. Parmi ces outils, il y a les bioindicateurs, tels que les microalgues et... -
Synthetic dataset used for validating srnadiff
This dataset contains all the mapped reads generated to validate the tool srnadiff on a synthetic dataset, where the "truth" is known. Samples 1 to 6 are supposed to be one... -
FlintDent GWAS dataset
This dataset corresponds to the data associated with the study: "Disentangling group specific QTL allele effects from genetic background epistasis in GWAS: an application to... -
An updated catalog of genes and species of the pig gut microbiota
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for... -
Genoscapist
Genoscapist is a web-tool generating high-quality images for interactive visualization of hundreds of quantitative profiles along a reference genome together with various... -
Ancestral reconstruction of the origin of M. incognita effectors in the Meloi...
Based on the mapping of non-redundant known M. incognita subventral (SvG) and dorsal (DG) gland effectors on the genomes of five Meloidogyne species ancestral numbers were... -
Scenarios for the introduction of environmental DNA-based tools in aquatic bi...
The French-Swiss project SYNAQUA (INTERREG France-Switzerland 2017-2019) focuses on the development and the validation of genomic tools for water quality biomonitoring based on... -
R-Syst: a network providing curated molecular databases and data analysis too...
R-Syst network deals about systematic and (meta) barcoding and provide curated molecular databases for species identification and provide tools for diagnosis and inventories....