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In vitro transcriptomic responses to pathogenic and non-pathogenic viral haem...
Rainbow trout cells (RTG-2) were inoculated in vitro with either a freshwater VHSV isolate (J167) that is pathogenic to rainbow trout or a marine VHSV isolate (1p49) that is... -
Integrative mRNA-miRNA interaction analysis associated with the immune respon...
Rainbow trout (Oncorhynchus mykiss) is an important cold-water fish widely cultivated in China. The frequent occurrence of viral diseases caused by infectious hematopoietic... -
Influence of Essential Oils in Diet and Life-Stage on Gut Microbiota and Fill...
Developing fish farming to meet the demands of food security and sustainability in the 21st century will require new farming systems and improved feeds. Diet and microbe... -
High-resolution genetic maps for rainbow trout reveal striking sex-specific d...
Construction of high resolution genetic maps for organisms is an important tool in assembling genomes, mapping genes, and, increasingly, for managing threatened populations.... -
Integrated mRNA and miRNA expression profile analyses reveal the potential ro...
As an important cold-water economic fish species, rainbow trout (Oncorhynchus mykiss) exhibits several intra-specific variation in skin pigmentation that can give rise to... -
Integrative mRNA-miRNA interaction analysis associated with the immune respon...
Rainbow trout (Oncorhynchus mykiss) is an important cold-water fish widely cultivated in China. The frequent occurrence of viral diseases caused by infectious hematopoietic... -
Single cell RNA-seq of Oncorhynchus mykiss B cells isolated from blood
These files represent single cell RNA-Seq data generated on a 10x Chromium genomics platform from Oncorhynchus mykiss B cells isolated from blood. Overall design: Three healthy... -
Oncorhynchus mykiss isolate:Arlee Genome sequencing and assembly
Although the most recent version of the rainbow trout genome assembly from the Swanson line has greatly improved the genome reference and is reliable for genes' predictions, it... -
Oncorhynchus mykiss isolate:Swanson DH Line Genome sequencing and assembly
In an effort to improve the rainbow trout reference genome sequence, we have re-sequenced the doubled haploid Swanson line using PacBio long reads. The current version of the... -
ATACseq for Rainbow trout embryos
The European project AQUA-FAANG aims to improve understanding the genome function and usage of genotype-to-phenotype prediction in the six most important European farmed fish... -
microRNA profiling for Rainbow Trout tissues
The European project AQUA-FAANG aims to improve understanding the genome function and usage of genotype-to-phenotype prediction in the six most important European farmed fish... -
OUC Oncorhynchus mykiss Sequencing
Raw data for Oncorhynchus mykiss in OUC -
RNA-Seq data of buccal cavity of teleost fish when infected with Ich
mucosal immune responses at the buccal cavity of the trout when infected with Ich -
Effect of an all-plant-based diet on gut microbiota in two strains of rainbow...
The present study aimed to investigate the growth performance, whole body composition, and intestinal microbiome of selected and non-selected rainbow trout strains in response... -
Nufimo - RNA seq (raw, unaliggned)
The RTgutGC (Rainbow trout gut cells) cell lines were treated with three different FAs (Palmitic, Oleic, and ARA). Three parallel trials in triplicates -
Differential DNA Methylation in Somatic and Sperm cells of Hatchery versus Wi...
The study was designed to investigate the impacts of hatchery spawning and rearing on steelhead trout (Oncorhynchus mykiss) versus the wild fish on a molecular level.... -
Resequencing of 17 INRAE rainbow trout isogenic lines
Resequencing of 17 INRAE rainbow trout isogenic lines -
GENOTROUT_WGS
This dataset has no description
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FC-ocular mucosa
Elucidating the Dynamic Immune Responses within the Ocular Mucosa of Rainbow trout (Oncorhynchus mykiss) after Infection with Flavobacterium volumnare -
Transcriptome analysis of spleen
Transcriptome analysis of spleen in rainbow trout after YR infection