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Candidate diazotrophs in deep-sea sediments are phylogenetically and cataboli...
Marine diazotrophs play a key role in determining ecosystem productivity by alleviating nitrogen limitation. However, we know little about the identity and activity of... -
Tijuana River pollution at Imperial Beach 2019
Rain events increase Tijuana river flow to levels that the international water treatment plant in the Mexico-US border can not process. Therefore, rain runoff and sewage... -
Environmental DNA metabarcoding differentiates between micro-habitats within ...
While the utility of environmental DNA (eDNA) metabarcoding surveys for biodiversity monitoring continues to be demonstrated, the spatial and temporal variability of eDNA, and... -
16S V4 sequencing of surface mucus from Montastraea cavernosa corals
These samples are from a time series experiment comparing different intervention treatments effectiveness at treating stony coral tissue loss disease (SCTLD). SCTLD-affected... -
Antibiotic suppression of Pocillopora coral bacteria microbiomes
Corals are important model organisms for understanding invertebrate host-microbe interactions however, the lack of controlled experimental approaches for manipulating... -
Developing a protocol, DNA extraction and pipelines for taxonomical assingmen...
Six DNA extraction methods were tested in pure cultures of different nano and picoplankton species. The same extractions were checked in non-axenic mock communities formed... -
Molecular detection of vector-borne pathogens from naturally infected dogs
Naturally infected canine blood with different vector-borne pathogens were subjected to microbial DNA enrichment using multiple methods. DNA extraction followed by PCR using... -
Ultra-accurate Microbial Amplicon Sequencing Directly from Complex Samples wi...
LoopSeq sequencing data derived from amplicons of the full-length 16S rRNA in bacteria, the 18S-ITS region in fungi, and random amplified segments of baterial genomes. -
DsrAB Mock community Variation
Benchmarking dsrAB amplicon generation and sequence processing and analysis -
Monthly time-series analysis of the marine microbial community from two size ...
This study examines monthly dynamics of marine microbial community between Jan-2005 and July-2018 from two size fractions (0.2-1.2 um and 1.2-80 um) at the San Pedro Ocean...