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Dendrophyllia sp., Eguchipsammia fistula, Rhizotrochus typus Targeted loci en...
Microbes associated with deep-sea coral remain poorly studied. The lack of symbiotic algae has led to the suggestion that associated microbes may play a fundamental role in... -
prokaryotes in the coastal waters
The coastal water area is a complex marine ecosystem with multiple environmental gradients, where the distributions and determinants of bacterioplankton communities remain... -
Metabarcoding surveys of the Arctic marine environment
This is a collection of samples taken for metabarcoding of environmental samples following the Earth Microbiome Project protocol.</p><p>For bacteria and archaea, we... -
Microscopic Marine Invertebrate Microbiomes
Characterising the microbiome composition of the world's smallest animals covering 21 host phyla. Animals were isolated from three habitats (sediment, macroalgae and water) and... -
Marine chlorophenol-respiring bacteria Raw sequence reads
Marine dehalogenator and its chaperones: microbial duties and responses in TCP dechlorination -
Leopard Coral Grouper
metagenome data for gut microbiota, seawater samples (costal seawater, inlet seawater, rearing tank seawater, outlet seawater) -
Microbial diversity in arctic freshwaters is structured by inoculation of mic...
A 12-year sample archive of DNA from Alaskan arctic tundra ecosystems are available to the Earth Microbiome Project for comparison of microbial diversity across a range of... -
Japanese eel microbiome
In rearing systems for the Japanese eel, the influence of bacterial communities on eel larval survival remains unknown. We compared the bacterial communities associated with... -
Baleen whales host a unique gut microbiome with similarities to both carnivor...
Mammals host gut microbiomes of immense physiological consequence, but the determinants of diversity in these communities remain poorly understood. Diet appears to be the... -
WGS of allopatric P. pungitius and P. sinensis
Whole genome re-sequencing of allopatric Pungitius sinensis and P. pungitius. Wild-caught Pungitius sinensis (Musashi Tomiyo) and lab-raised Pungitius pungitius from Denmark... -
metaT
Data deposited here are raw sequences produced for the following paper: Wutkowska M., Vader A., Logares R., Pelletier E., Gabrielsen T.M., 2023, Linking extreme seasonality and... -
Tijuana River pollution at Imperial Beach 2019
Rain events increase Tijuana river flow to levels that the international water treatment plant in the Mexico-US border can not process. Therefore, rain runoff and sewage... -
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
Conventional wisdom holds that PCR amplification for sequencing should employ pooled replicate reactions to reduce bias due to jackpot effects and chimera formation. However,... -
gradient bacteria
coastal gradient bacteria -
Latitudinal surveys of algal-associated microorganisms
Over the last decade, disease has emerged from being a long overlooked factor in natural communities to become an increasing focus for ecological research in terrestrial and... -
Viral and Protistan Associates with New Zealand Asteroidea
Investigation of viruses and protists associated with asteroidea in the Auckland region, New Zealand. The goal of this work was to understand their diversity, and provide... -
Microbiome profiling and prediction of antibiotic resistance genes in untreat...
This dataset has no description
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Developing techniques of DNA/RNA analyses for studying ecological communities...
Monitoring natural ecological communities is often time-, labour-, and money-consuming work. DNAs that are derived from organisms and remain in natural environments... -
Microbial Ecology of Wasting Disease in Pisaster ochraceus
Sea star wasting is a condition affecting >20 asteroid taxa, and since 2013 has caused mass mortality in the northeast Pacific Ocean. We studied the progression of wasting... -
DNA metabarcoding for biodiversity monitoring in Antarctic nearshore environm...
(1) Are there differences between sediment and water environmental DNA (eDNA) samples in terms of (a) number of reads assigned to metazoans, non-metazoans, and unclassified, (b)...