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Metabolic reprogramming links resident immunity and apoptosis in the liver of...
Background & Aims: Hepatitis induced by hepatitis B virus (HBV) infection significantly affected global public health, and illustrating the metabolic changes of... -
Genetic diversity within and among migratory groups of steelhead Oncorhynchus...
In this study, we investigate variation among steelhead in the Rogue River at presumed neutral genetic markers and markers from regions with known associations to... -
Oncorhynchus mykiss Transcriptome or Gene expression
Deep RNA sequencing (RNA-seq) was performed to provide an in-depth view of the transcriptome of red and white skeletal muscle of exercised and non-exercised rainbow trout... -
IgHmu CDR3 sequences from M-LAs and non M-LAs samples microdissected from rai...
Rainbow trout IgHmu CDR3 sequences were produced from different Melanomacrophage associated Lymphoid Aggregates (M-LAs), or control areas (non M-LAs) microdissected from the... -
California Rainbow Trout Heart RNAseq
These data are the result of RNAsequencing of heart samples of rainbow trout acclimated to 3 different, climatically relevant temperatures. -
EcoToxChip 2016 LSARP RNASeq database
As part of the EcoToxChip project, 49 distinct exposure studies were conducted on three lab model species (Japanese quail, fathead minnow, African clawed frog) and three... -
Effects of animal by-product meals as an alternative to fishmeal protein sour...
Animal by-product meals from the rendering industry could provide a sustainable and commercially viable alternative to fishmeal (FM) in aquaculture. However, the introduction of... -
Oncorhynchus mykiss Raw sequence reads
Anadromous Oncorhynchus mykiss used in Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss) -
Resequencing of 11 INRAE rainbow trout isogenic lines
Resequencing of 11 INRAE rainbow trout isogenic lines (minimum depth 10x) -
Rainbow trout public response against VHSV is neutralizing
The light chain associated to the IgH public clonotypes during trout response against VHSV were identified and the Abs expressed were demonstrated to mediate virus neutralisation. -
Raw read data from rainbow trout spleen and NALT libraries Raw sequence reads
In this work, we studied the modifications of the rainbow trout Immunoglobulin repertoires, in NALT and spleen, following vaccination with the bacterin ERM. To this purpose, we... -
Study of microbial diversity in the whole gastro-intestinal tract of Oncorhyn...
Characterization of the gut microbiome of first feeding Rainbow trout (Oncorhynchus mykiss) in relation to various dietary protein sources (plant-based proteins vs. fishmeal) -
Generation of a rainbow trout reference transcriptome for identifying genes r...
Stressors inherent in aquaculture production can induce physiological responses which can have adverse effects on growth, reproduction and immunocompetence. We developed a... -
Circulating miRNA repertoires in different physiological and pathological con...
The objective of the Phenomir project (FEAMP funding) is to propose an innovative solution for non-invasive phenotyping by analysis of circulating microRNAs in biological fluids... -
High-throughput sequencing reveals microRNAs in response to heat stress in he...
Purpose:Our data significantly advance understanding of heat stress regulatory mechanism of miRNA in the head kidney of rainbow trout Methods:miRNAs of rainbow trout were... -
Oncorhynchus mykiss Transcriptome or Gene expression
cDNA was sequenced from five clonal (isogenic) lines of rainbow trout individually in order to identify SNPs and estimate the number of duplicated genes. Two tissues, embryo and... -
Dynamic and systemic regulation occurs in the liver of rainbow trout (Oncorhy...
The hypoxia frequently occurs in natural aquatic systems and aquaculture environment due to the natural reasons and human factors such as extreme climate, high density farming,... -
Effects of salinity acclimation on expression of lncRNAs in scales of young r...
To assess whether bone homeostasis in O. mykiss scales is affected by salinity changes, we used the Illumina sequencing platform to detect the overall lncRNAs expression in O.... -
IGH repertoire of VHSV-vaccinated wild-type rainbow trout
Deep sequencing of IgHmu repertoire expressed in the trout spleen after vaccination against VHSV -
RNA-seq Analysis of Hepatic Response to Handling and Confinement Stress in Ra...
Fish under intensive rearing conditions experience various stress conditions, which have negative impacts on survival, growth and fillet quality. Identifying and characterizing...