92 datasets found

The only known function of eukaryotic RNA-dependent RNA polymerases (RdRP) is the generation of siRNAs or siRNA precursors in the RNA interference process. The Branchiostoma...

Transcriptomic analysis of Phallusia mammillata and Branchiostoma lanceolatum embryos following BMP and Notch pathways modulation.

Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation. Remarkably, in contrast to...

This project collects the genomic and transcriptomic data generated for Branchiostoma lanceolatum, common name amphioxus, to facilitate genome assembly and annotation as part of...

Using hMeDIP-seq we validated the single-base resolution hydroxymethylomes (ACE-seq) of sea urchin, lancelet and zebrafish embryos. Overall design: hMeDIP-seq was perfomred on...

Study of Nitric Oxide and Retinoic Acid pathways in amphioxus pharynx development

The brain requires complex mechanisms of genome regulation to encode and store behavioural information. In mammals, DNA methylation deposited at non-CG dinucleotides...

The genome of the cephalochordate Branchiostoma lanceolatum was sequenced from the DNA of a single adult male specimen collected in Banyuls-sur-mer (France) using the illumina...

4C-seq experiments to study the evolution of the chromatin architecture of ancient gene regulatory blocks at the origin of vertebrates. Overall design: 4C-seq experiments...

We constructed a reference genome and gene annotation for the European amphioxus, Branchiostoma lanceolatum, with long-read PacBio data and long-distance chromosome conformation...

The goal of this projet was to identify genomic region showing differential accessibility between control and Activin-treated amphioxus explants at two time points (gastrula and...

to study the immune system of amphioxus

Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation. Remarkably, in contrast to...

We compared the transcriptomes of Amphioxus (Branchiostoma lanceolatum) control and SU5402 treated embryos to define putative FGF signalling pathway target genes during...

What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory...

To be able to fully comprehend the contribution of the epigenome to embryonic development, it is important to understand how various components of the epigenome evolved. To...

The goal of this projet was to identify genes differentially expressed between control and Activin-treated explants at two time points (gastrula and neurula stage) Overall...

Using ACE-seq we investigated single-base resolution hydroxymethylomes of sea urchin, lancelet and zebrafish during development. Overall design: ACE-seq was perfomred on (i) 24...

We investigate tissue transcriptomic evolution across bilaterian animals by analyzing RNA-seq data from eight different tissues across twenty species. Overall design:...

Transcriptomic response of four aquatic animals