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Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Characterization of antimicrobial and antibiotic resistance in wastewater pri...
Metagenomic and genome sequences from samples collected from the primary effluent of wastewater around Baltimore, MD. -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
BactID
Bacterial identification run in house at UCLA -
Enterobacterales, Acinetobacter spp, Burkholderia spp, Pseudomonas spp, Steno...
Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia -
Genomic epidemiology and patterns of antimicrobial resistance of neonatal sep...
The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden... -
Enhanced detection system for hospital associated transmission (EDS-HAT)
Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and... -
Small Farm Holder Cropping Systems Drive Soil Properties and Microbial Profil...
Metabarcoding of prokaryotic and fungal ribosomal DNA was used to describe the microbial communities in soils of remnant equatorial rainforest, maize-bean intercrop, and... -
the Bacillus and Burkholderia strains are plant beneficial bacterial strains ...
Bacillus and Burkholderia strains show beneficial effects on citrus -
FDA-ARGOS is a database with public quality-controlled reference genomes for ...
<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to... -
WGS of bacteria used in a diverse Mock
A total of 227 genomes were sequenced using Illumina HiSeq 4000, as will serve as a baseline for benchmarking various metagenomics tools. In addition, 61 other genomes used for... -
Bloodstream_surveillence_across_Africas
A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use...