17 datasets found

Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) is extensively employed for the identification filamentous fungi on MALDI Biotyper...

Tobacco target spot-disease severity

Genome sequencing of fungal mycoparasites of Clonostachys, Trichoderma and plant pathogenic Fusarium spp.

Evaluating metagenomic software is key for optimizing metagenome interpretation and focus of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI). The...

Integrated metabolome and microbiome reveal soil microbial dynamics, metabolic functions and and their correlation in a millennium paddy soil chronosequence

Tobacco bacterial wilt occurred from the topping position of tobacco plant analyzed by high-sequencing technique

In this study, different crop rotations were used to evaluate their ecological effects on cucumber fusarium wilt, root-knot nematode incidences, and host fungal microbiome...

The increased usage of long read sequencing has not been matched with publicly available databases suited for error-prone long reads when applied to metabarcodes. We address...

Genome sequence database of fungi found in foods for strain characterization and identification

In the present study, we isolated, sequenced, and genotyped 628 fungal isolates from a semi-arid grassland in eastern Germany. We report on bacterial colonization of those yeast...

Soil microbial community structure and nutrient limitation

PCB transforming fungi ITS sequences

The repeated emergence of coffee wilt disease caused by Fusarium fungi over the past century severely impacted coffee production across sub-Saharan Africa. To improve disease...

Fusarium spp. are fungal pathogens of humans and plants. Fusarium oxysporum and Fusarium solani are important species isolated from infections such as onychomycosis, fungal...

The aim of this project was to assess the sensitivity of Oxford nanopore sequencing MinION in early detection and diagnostics of fungal and oomycetes pathogens in greenhouse...

Study the micorbiomes of woody tissues of grapevines that were treated or not by sodium arsenite

Cultured isolates of Fusarium species from diseased and healthy Citrus.