35 datasets found

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

EXPression AloNg Development and Evolution (EXPANDE) project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief, taking advantages...

Data from the paper "Extracting Phylogenetic Signal from Phylogenomic Data: Higher-Level Relationships of the Nightbirds (Strisores)," published in Molecular Phylogenetics and...

We developed a probe set that captures exonic regions of 46 genes representing the phototransduction cascade and other light responses. We successfully capture an average of 64...

The brain requires complex mechanisms of genome regulation to encode and store behavioural information. In mammals, DNA methylation deposited at non-CG dinucleotides...

Commonly used 16S rRNA primers miss much of the archaeal diversity present in the vertebrate gut, leaving open the question of which archaea are host associated, the...

Metagenomic analysis of caecum in Global Commercial Broilers and Kadaknath using 16sRNA V3-V4 primers.

Food allergies (FAs) are a crucial public health problem and a severe food safety issue, resulting in an urgent need for an accurate method to detect the hundreds of allergens...

Characterizing the gut microbiota of free-range and alternative poultry production systems provides information which can be used to improve poultry welfare, performance and...

RNA/transcriptome sequencing was performed on 15 libraries from poultry and wild birds captured in Brazil. All libraries were sequenced on a multiples lanes (paired-end, 150bp...

The DNA Zoo is a consortium focused on facilitating conservation efforts through the rapid generation and release of high-quality genomics resources.

We estimated the germline mutation rate of 68 species of vertebrates using WGS of pedigrees (i.e. at least 3 individuals mother, father, and their offspring).

There is rich genetic diversity in India’s native poultry breeds, and the hybrid exotic lines often used in Indian commercial production are distinct from the majority of...

Comparative analysis of avian immune responses to HPAI - Please contact authors for more information or if you intended to use the data at ackarawita@yahoo.com

Gene expression analysis using QuantSeq 3' mRNA data

A major challenge in biology is to link cellular and molecular variations with behavioral phenotypes. Here, we approached this by studying somatosensory neurons from a panel of...

Chickens are highly susceptible to H5N1 highly pathogenic avian influenza virus (HPAIV) while ducks are not. In this work, we analysed the microRNA expression in the spleen,...

Sex in birds is genetically determined, molecular mechanism of which is not well-understood. Their Z sex chromosome (chrZ) lacks whole chromosome inactivation as known for...

Study to investigate IFITM locus in chickens This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome...

Duck is a natural host of most subtypes of influenza A virus (IAV) and many strains circulated in this reservoir without causing fatal zoonotic disease. This makes duck an...