Dataset - B2FIND

20Mammals

Definition of functional regulatory regions in the vast non-coding fractions of mammalian genomes remains a daunting challenge that underscores our limited understanding of...

Comparative analysis of genome-scale, base-resolution DNA methylation profile...

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

RNA-Seq analysis of gene expression divergence in mammalian liver

The connection between evolution of regulatory elements and downstream gene expression is incompletely understood in mammals. We carried out a large-scale comparison of matched...

Gut vertebrate gut archaeal community assessment via archaea-targeting 16S rR...

Commonly used 16S rRNA primers miss much of the archaeal diversity present in the vertebrate gut, leaving open the question of which archaea are host associated, the...

Bacterial 16S rRNA metabarcoding targeting the v3-4 hypervariable region of A...

Advances in sequencing technologies have revealed the complex and diverse microbial communities present in ticks (Ixodida). As obligate blood feeding arthropods, ticks are...

Genome Skimming with Nanopore Sequencing Precisely Determines Global and Tran...

This study determines that genome skimming, shallow depth of sequencing, is capable of accurately quantifying global DNA methylation level across a range of vertebrates.

Raw sequence reads from Danish species

Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references.

Mitochondrial heteroplasmy in vertebrates using ChIP-sequencing data

Mitochondrial heteroplasmy, the presence of more than one mtDNA variant in a cell or individual is not as uncommon as previously thought. It is mostly due to the high mutation...

DNA Zoo

The DNA Zoo is a consortium focused on facilitating conservation efforts through the rapid generation and release of high-quality genomics resources.

Parasites and diet of raccoons from Germany

The study investigates the parasite burden and feeding habits of raccoons in 3 german federal states and thus the impact on endangered native species that could be threatened by...

Single cell atlas for mammals, reptiles and birds

Established the broadest single-nucleus RNA sequencing study to date, covering 11 representative species, including pets (cat, dog, hamster, and lizard), livestock (goat and...

Large scale metagenome assembly reveals novel animal-associated microbial div...

Large-scale metagenome assemblies of human microbiomes have produced a huge catalogue of previously unseen genomic data, but has been applied to only a few of the >66 000...

Transcriptomic and lipidomic profiling of subcutaneous and visceral adipose t...

Transcriptomic and lipidomic profiling of subcutaneous and visceral adipose tissues in 15 vertebrates

Growth, health, survival, and haematological data of growing rabbits of diffe...

The datafiles include measurements on growing rabbits (Oryctolagus cuniculus) collected at the experimental installation PECTOUL of GenPhySE laboratory at INRAE. Data were...