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single nuclei RNAseq data from Atlantic salmon (Salmo salar) gill
An snRNAseq analysis of the Atlantic salmon gill to characterise its cellular complexity and development. Overall design: Atlantic salmon parr (>14cm) were raised on constant... -
ROS Work Package 3 - RNA-Seq muscle (raw, unaligned)
We investigated the effects of photoperiod and temperature on redox system of Atlantic salmon from March to August. 36Muscle samples were submitted -
A Genomic Perspective on an Old Question: Salmo trouts or Salmo trutta (Teleo...
Trouts of the Salmo trutta species-complex show high morphological and ecological diversity that, along with their very wide distribution, have led to morphological description... -
ROS Work Package 3 - RNA-Seq bone (raw, unaligned)
We investigated the effects of photoperiod and temperature on redox system of Atlantic salmon from March to August. 36 bone samples were submitted -
Response of the Atlantic salmon transcriptome to pancreas disease
This study aimed to gain a better understanding of the differences between salmon with high and low genomic breeding values (H-gEBV and L-gEBV respectively) for PD resistance -
Response of Atlantic salmon transcriptome to oxygen treatments
This study aimed to assess the effect of dissolved oxygen treatments (30%O2, 60%O2 and 100%O2) on gene expression during the early development of Atlantic salmon (alevin stage). -
COMPARE Food Ring Trial - wet lab
Shotgun metagenome sequencing data generated from nucleic acids extracted from a spiked smoked salmon sample from the 2018 COMPARE Food Ring Trial - wet lab -
ROS Work Package 3 - RNA-Seq brain samples (raw, unaligned)
We investigated the effects of photoperiod and temperature on redox system of Atlantic salmon from March to August. 36 brain samples were submitted -
Genotype Environment interaction in Salmon
Genotype Environment interaction in Salmon -
Methylation of SRS infected Atlantic salmon (headkidney and liver)
RRBS data from 33 headkidney and 33 liver Atlantic salmon samples infected with Piscirickettsia salmonis (SRS) -
Skin samples of Atlantic salmon after single infection and co-infection with ...
Sea lice infestations and winter ulcer disease caused by Moritella viscosa are two major challenges for the Atlantic salmon (Salmo salar) aquaculture industry. Despite their... -
miRNA expression profiling in different tissues and early developmental stage...
miRNA expression study in Salmo salar to identify miRNAs that may be important in maintenance of tissue specific functions and in regulation of embryonic development -
Profiling the T cell receptor alpha/delta locus in Salmonids
Basal TCR alpha repertoire in healthy non-infected Atlantic salmon (salmo salar) -
pancreas disease transcriptome - Atlantic Salmon
Cardiac transcriptome sequence data from PD (SAV3) infected animals that either died shortly after infection or survived a four-week challenge trial. -
Effects on the liver transcriptome in Baltic salmon: contributions of contami...
Salmon liver samples were collected from three areas of the Baltic Sea during years 2007 and 2008. Individuals with wild or hachery-reared origin were compared within the same... -
Interferon Alpha (IFNa) Induction and Knockout Analysis of ISGs in Atlantic S...
To investigate differentially expressed genes (DEGs) upon challenge with infectious salmon anemia virus (ISAV) or infectious pancreatic necrosis virus (IPNV) after IFNa... -
NutrEpi Work Package 2 - RNA-Seq (raw, unaligned)
Liver samples of Atlantic salmon from four different spawning seasons (regular, early, late, and off-season) were collected at the larval stage for RNA-seq. -
DNA methylation dynamics in Atlantic salmon (Salmo salar) challenged with hig...
In this study, we employed Multiplex Bisulfite Sequencing (MBS) to measure CpG methylation within a ~500 bp region around the transcription start of six thermal/hypoxia... -
A sample of smoked salmon, spiked with a variety of microbes has been sent to...
A sample of smoked salmon, spiked with a variety of microbes has been sent to a number of labs. At APHA, separate RNA and DNA extractions were performed and each libraries made... -
Impact of short photoperiod length on smoltification (RNAseq)
This experiment was set up to evaluate the effect of the duration of a short photoperiod (winter-like conditions, 8 hours light, 14 hours dark) on the smolt transcriptome in...