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Human microbiome associated bacterial genomes
This project is designed to uncover antimicrobial drug leads from human symbionts. -
Sponge-associated bacteria
Culturable bacterial community associated with marine sponge Aplysina -
Hospital Microbiome Isolates
Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Salmonella,Vibrio parahaemolyticus,Staphylococcus aureus Genome sequencing an...
Comparative genome studies of these bacteria. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Transcriptome data of the three strains
Multiple cellular metabolic pathways were altered by CC2 in S. aureus ATCC29213, B. cereus Y1, and Vibrio parahaemolyticus ATCC17802, and comparative transcriptome analysis... -
Reliability of species detection in 16S microbiome analysis
The use of NGS-based testing of the bacterial microbiota is often impeded by inconsistent or non-reproducible results, especially when applying different analysis pipelines and... -
Enhanced detection system for hospital associated transmission (EDS-HAT)
Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and... -
Major food bacterial pathogens in the united states and around the world, inc...
University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. coli,... -
NIHR_Global_Health_Research_Unit_on_Genomic_Surveillance_of_Antimicrobial_Res...
This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre... -
GenomeTrakr WGS Validation Strain Set
This BioProject hosts genome sequence data for the FDA GenomeTrakr's validation strain set, which includes 32 bacterial species of foodborne pathogens and common contaminants.... -
Evaluation of De novo assembly of bacterial genomes with rapid MinION sequenc...
Complete genome sequences of organisms are the foundation of understanding biological functions. High-throughput parallel sequencing technologies such as Illumina make the... -
Clinical metagenomics and metatranscriptomics for pathogen discovery
This project aims to develop DNA and RNA sequencing as tools for pathogen discovery in a clinical setting. -
Microbiome characterization using transfer RNA sequencing
Here we report a direct tRNA sequencing protocol and software to simultaneously examine the composition and biological activity of naturally occurring microbial communities. Our... -
SC PHL pathogens isolated from wastewater samples that are not routine Genome...
Whole genome sequencing of wastewater isolates that do not fall into GenomeTrakr enteric or ESKAPE organisms. -
FDA-CFSAN: microbial foodborne pathogen research
Draft and complete genome sequences of foodborne bacterial pathogens collected for research purposes at the FDA's Center for Food Safety and Applied Nutrition. -
Pathogenic microorganism Genome sequencing
Genome sequencing of bacteria from State collection of pathogenic microorganisms Obolensk. Collection includes bacteria, fungi, and cell-lines. -
FDA-ARGOS is a database with public quality-controlled reference genomes for ...
<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...