23 datasets found

A collection of Viridans isolates covering 24 taxonomically designated species, including Type strains, all those analysed previously using MLSA, those strains utilized for sera...

Streptococcus pyogenes cause a wide variety of infectious diseases, from relatively benign to life threatening. S. pyogenes can be subtyped according to the serotypes of the M...

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...

A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use...

The study describes a workflow to encourage the clinical utility and potential of next generation sequencing for the simultaneous detection of bacteria, fungi and antimicrobial...

Sequencing of several clinical isolates of different species

This is a large scale project with the sequencing co-funded by collaborators at the University of Cape Town and WT Core (I2818). This is a project aimed at deepening our...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

The purpose of this project was to determine virulent factors of zoonotic streptococci including S. suis, S. canis, and S. dysgalactiae subsp. equisimilis using genome sequencing.

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in...

Metagenomes containing bacteria from positive blood culture broths in patients with sepsis

Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project...

Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground...

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

Bacterial identification run in house at UCLA

This project sequenced and annotated the genome of the southern blue-ringed octopus (Hapalochlaena maculosa) with the aim of understanding the evolution of this unique genus...

Miscellaneous bacterial isolates collected at six regional referral hospitals in Tanzania in 2020-2021. The "ESKAPE pathogen" isolates from this project were published in...