Alignment of next-generation sequencing data against various databases through QIIME 2 to analyze vaginal microbiota in Japanese women

The aim of this study was to compare taxonomic classifications results from vaginal microbiota by the Greengenes, SILVA and Basic Local Alignment Search Tool (BLAST) databases, determining the most appropriate database for our NGS data analysis.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012B1217353708DAFB2F195EA7C4CC163E34DE33C83
Metadata Access https://data.blue-cloud.org/api/collections/B1217353708DAFB2F195EA7C4CC163E34DE33C83
Provenance
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (135.000W, 34.000S, 135.000E, 34.000N)
Temporal Point 2022-03-05T00:00:00Z