Amplicon pyrosequencing and development of new Real-time specific assays reveal Phytophthora species diversity in Holm Oak in eastern Spain

Oak decline in non calcareus soils in south-western Spain has been associated with Phytophthora cinnamomi for decades. However, other Phytophthora species such as P. quercina and P. psychrophila have been associated with Quercus decline in the eastern part of Spain where calcareous soils are predominant. With the aim of investigating the involvement of Phytophthora spp. in oak decline in eastern Spain, two forests in different geographical areas were selected as sampling sites: the Natural Park ‘Carrascar de la Font Roja’ (Alicante) and the Natural Park ‘Tinença de Benifassà’ (Castellón). Soil samples were analyzed in parallel by isolation using baiting methods and by amplicon massive sequencing.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012BD03581EFA04ECF32F53F8D239A03AD161272C56
Metadata Access https://data.blue-cloud.org/api/collections/BD03581EFA04ECF32F53F8D239A03AD161272C56
Provenance
Instrument 454 GS Junior; LS454
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2014-06-11T00:00:00Z