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ASCA and celiac disease
serological data, Excel file format -
The first reliable catalog of bovine circular RNAs
A first analysis was performed with CircDetector, and included the analysis of the expression of exonic circRNAs. We proposed an additional list of exonic circRNAs, only... -
Metabarcoding data MetaPDOcheese project
An exhaustive analysis was performed on more than 2,000 microbiota from 44 French Protected Designation of Origin (PDO) cheeses and associated milks. We characterized the... -
MilkOligoThesaurus: A milk oligosaccharide thesaurus (HoloOLIGO project)
This dataset is a thesaurus (MilkOligoThesaurus) gathering milk oligosaccharide names. This dataset is a table of names of unique milk oligosaccharide (rows) and descriptors... -
Gene Expression RT-qPCR Data of Swine Influenza and PRRSV Interaction in Alve...
Abstract of the publication : Porcine respiratory disease complex represents a major challenge for the swine industry, with swine influenza A virus (swIAV) and porcine... -
Selection of total-RNAseq reads for circRNA characterization in cattle
To provide a global and rapid characterization of circular RNAs present in bovine tissues, we selected chimeric reads from total-RNAseq of 117 samples originating from 26 tissues. -
Viral OTU from blood and fecal human samples
This repository contains the viral OTU assembled from the viromes produced from human blood and fecal samples. 14 were healthy subjects and 15 were Crohn's disease patients. The... -
MD simulations and ML dataset of HLA-EpiCheck epitope predictor tool
This dataset contains all the data used to implement the B-cell epitope predictor tool called HLA-EpiCheck (see https://doi.org/10.1101/2023.12.18.572133). CONTENTS: -... -
Data set of Arabidopsis thaliana leaves
Collection of Arabidopsis thalinana leaves. Mature rosette leaves or young developping leaves Different genotypes - WT (Col) - mir164a-4 - mir164a-4 mir164b-1 - mir164b-1 -... -
Fake news and vaccine hesitancy
As the COVID-19 pandemic continues to exact a heavy death toll, weakens health systems and devastates economies, the discovery and delivery of vaccines have rekindled hope.... -
Intergenic RNAPII Atlas : output data
Characterizing intergenic transcription at RNA polymerase II binding sites in normal and cancer tissues Pierre de Langen, Fayrouz Hammal, Elise Guéret, Jean-Christophe Mouren,... -
Données de réplication pour deep sequencing of two mock phage communities
Fastq files contain Illumina pair end reads (2x150 nt). The first set deals with a synthetic mix of 5 phage genomes. Files have "Acc", "G" or "T7" prefixes. Acc stands for xGen... -
An easy and robust method for isolation and validation of single nucleotide p...
This dataset includes the sequence and SNP data, and the scripts for detecting SNP from targeted sequences isolated from the Erysipe alphitoides draft genome. The draft genome... -
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal ...
Dataset overview This dataset provides: the updated Integrated Gene Catalog of the human gut microbiota (aka IGC2) 1,989 Metagenomic Species Pangenomes (MSPs) This dataset... -
MetaChick: characterization of the chicken caecal metagenome by deep shotgun ...
Dataset overview This dataset provides: a non-redundant high-quality catalog of 13.6 million genes 30,031 Metagenome-Assembled Genomes (MAGs) 2,420 Metagenomic Species... -
Unifying Antimicrobial Peptide Datasets for Robust Deep Learning-Based Classi...
Leguminous crops are vital to sustainable agriculture due to their ability to fix atmospheric nitrogen, improving soil fertility and reducing the need for synthetic fertilizers.... -
Supplementary material for Colinet et al. 2024 - Functional carbohydrate-acti...
Supplementary material for for the manuscript entitled Functional carbohydrate-active enzymes acquired by horizontal gene transfer from plants in the whitefly Bemisia tabaci by... -
Diat.barcode, an open-access barcode library for diatoms
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They... -
Data on cow activity in relation to health and welfare
This dataset contains hours per hours the activity level of cows on four farms. These data were used in Wagner et al. 2021. The dataset contains 4 files, one for each farm.... -
Tracking of Gag-mCherry spots
Gag-mcherry spot tracking in individual HeLa CCL2 cells or HeLA Kyoto BST2- cells. The cells were transfected by Gag/Gag-mCherry alone or Gag/Gag-mCherry along with Vps4A E228Q,...