Illumina sequencing of PCR products derived from TBLV-induced tumors in the presence and absence of Rem

Sequencing of portions (polymerase, envelope, and part of the 3’ LTR) of the TBLV retroviral genome were recovered by PCR amplification from tumors induced with or without Rem expression. PCR products from the mouse Gapdh gene were obtained as a control for acquisition of mutations during PCR and library preparation. Overall design: PCR products and library preparation from several different parts of the TBLV genome were obtained for sequence analysis to determine if the loss of Rem gave hypermutation typical of Apobec cytidine deaminases.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0120B07F02DE8E6A10EA5F3ABC64D702AA2C59C487B
Metadata Access https://data.blue-cloud.org/api/collections/0B07F02DE8E6A10EA5F3ABC64D702AA2C59C487B
Provenance
Instrument Illumina HiSeq 2000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor Center for Biomedical Research Support, University of Texas at Austin
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Point 2019-07-16T00:00:00Z