Genomic insights into Vibrio cholerae isolates associated with cholera outbreaks in the Democratic Republic of Congo between 2018 and 2022

For the past three decades, the Democratic Republic of Congo (DRC) has been severely affected by recurrent cholera outbreaks. Genomic studies have shown that all the isolates of V. cholerae causing cholera belonged to the 10th transmission event within the third wave of V. cholerae O1 El Tor of the 7th cholera pandemic (7PET). In this study, 174 clinical V. cholerae isolated between 2018 and 2022 from the Great Lakes Region (GLR) provinces of North-Kivu, South-Kivu, and Tanganyika, as well as from the Kasai Oriental province in the center of the country, were whole-genome sequenced and their genomes analyzed for phylogenomic changes compared to V. cholerae isolates from past years in the same country

Identifier
Source https://data.blue-cloud.org/search-details?step=~012E293B369F2912FC5AA421DA4282BE82E9DC86737
Metadata Access https://data.blue-cloud.org/api/collections/E293B369F2912FC5AA421DA4282BE82E9DC86737
Provenance
Instrument Illumina MiSeq; GridION; ILLUMINA; OXFORD_NANOPORE
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor Institut de recherche experimentale et clinique - IREC
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Temporal Coverage Begin 2018-01-01T00:00:00Z
Temporal Coverage End 2024-01-01T00:00:00Z