Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures

DOI

This dataset comprises gene expression data in the deep pelagic jellyfish Periphylla periphylla exposed to anthropogenic disturbance. Specifically, we tested the effects of ocean warming and sediment plumes from deep-sea mining during ex situ experiments, using Periphylla collected in the Lurefjord and Sognefjord, Norway, in 2021. Gene expression is given in normalised counts for each expressed transcript (for both the temperature and suspended sediment separately). Moreover, this dataset lists all significantly expressed transcripts and their summary statistics (e.g. log2 fold change), as identified with Likelihood Ratio Tests (LRT) in DESeq2 (Love et al. 2014), in addition to transcript annotations performed with Trinotate v3.2.1 searching the Blastx, Blastp, Pfam, UniProt-SwissProt, GO, eggNOG and KEGG databases (Bryant et al. 2017).

Identifier
DOI https://doi.org/10.1594/PANGAEA.962217
Related Identifier IsSupplementTo https://doi.org/10.1038/s41467-023-43023-6
Related Identifier References https://doi.org/10.1594/PANGAEA.957395
Related Identifier References https://doi.org/10.1594/PANGAEA.957367
Related Identifier References https://doi.org/10.1016/j.celrep.2016.12.063
Related Identifier References https://doi.org/10.1186/s13059-014-0550-8
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.962217
Provenance
Creator Stenvers, Vanessa (ORCID: 0000-0001-9403-257X); Hauss, Helena ORCID logo; Schmittmann, Lara ORCID logo; Bayer, Till ORCID logo; Havermans, Charlotte ORCID logo; Hentschel, Ute (ORCID: 0000-0003-0596-790X); Sweetman, Andrew K; Hoving, Henk-Jan T ORCID logo
Publisher PANGAEA
Publication Year 2023
Funding Reference Horizon 2020 https://doi.org/10.13039/501100007601 Crossref Funder ID 818123 https://doi.org/10.3030/818123 Integrated Assessment of Atlantic Marine Ecosystems in Space and Time
Rights Creative Commons Attribution 4.0 International; https://creativecommons.org/licenses/by/4.0/
OpenAccess true
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 2 data points
Discipline Earth System Research
Spatial Coverage (-10.105W, 47.250S, 5.585E, 61.100N); Norwegian fjord; South Atlantic Ocean
Temporal Coverage Begin 2020-12-09T10:34:15Z
Temporal Coverage End 2021-11-20T17:30:00Z