The libraies used for draft genome assemby of Pinctada margaritifera are: i) an illumina shotgun library (125pb PE, insert size 400pb, sequencing depth 150X) ii) a 3kb mate paire library (125pb PE, insert size 3000 pb, sequencing depth 50X) iii) a 10kb mate pair library (125pb PE, insert size 10000 pb, sequencing depth 15X). The shotgun library was cleaned using trimmomatic and corrected using SGA-ICE. The mate-pair libraries were cleaned and corrected using NextClip.