NOR5/OM60 clade of the Yangtze River estuary

DOI

The phylogeny, abundance, and biogeography of the NOR5/OM60 clade was investigated. This clade includes "Congregibacter litoralis" strain KT71, the first cultured representative of marine aerobic anoxygenic phototrophic Gammaproteobacteria. Most of the NOR5/OM60 sequences were retrieved from marine coastal settings, whereas there were fewer from open-ocean surface waters, deep-sea sediment, freshwater, saline lakes and soil. The abundance of members of the NOR5/OM60 clade in various marine sites was determined by fluorescence in situ hybridization using a newly designed and optimized probe set. Relative abundances in coastal marine waters off the Yangtze estuary were up to 3% of the total 4',6-diamidino-2-phenylindole (DAPI) counts. A small cruise was undertaken from 2006-09-06 to 2006-09-08 in the Yangtze River estuary. Samples were taken from surface water, and immediately fixed with 1% paraformaldehyde (PFA) for 1 h, filtered onto polycarbonate filters (Millipore, 47 mm in diameter, 0.2 µm pore size) and stored frozen at -20 °C.

Supplement to: Yan, Shi; Fuchs, Bernhard M; Lenk, Sabine; Harder, Jens; Wulf, Jörg; Jiao, Nianzhi; Amann, Rudolf (2009): Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria. Systematic and Applied Microbiology, 32(2), 124-139

Identifier
DOI https://doi.pangaea.de/10.1594/PANGAEA.860515
Related Identifier https://doi.org/10.1016/j.syapm.2008.12.001
Related Identifier https://store.pangaea.de/Publications/Yan-etal_2009/Oligonucleotide-probes_Yan-etal_2009.pdf
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.860515
Provenance
Creator Yan, Shi ORCID logo; Fuchs, Bernhard M ORCID logo; Lenk, Sabine; Harder, Jens ORCID logo; Wulf, Jörg; Jiao, Nianzhi; Amann, Rudolf ORCID logo
Publisher PANGAEA
Publication Year 2024
Rights Data access is restricted (moratorium, sensitive data, license constraints)
OpenAccess false
Representation
Resource Type Supplementary Dataset; Dataset
Format text/tab-separated-values
Size 59 data points
Discipline Earth System Research
Spatial Coverage (121.600W, 30.500S, 123.500E, 32.000N); Yangtze River
Temporal Coverage Begin 2006-09-06T00:00:00Z
Temporal Coverage End 2006-09-08T00:00:00Z