Replication data of C6 group for: "A thermalized electrokinetics model including stochastic reactions suitable for multiscale simulations of reaction-advection-diffusion systems"

DOI

All primary data files of measurements and processed data of the journal article mentioned under related publications from C6 group can be found here.

The data is structured according to figures and schemes in the research article and contains the following data types: text files, .ipynb (jupyter notebooks), .py (python files)

The important script of this dataverse is the fluctuating_reactive_ek.ipynb jupyter notebook. To run this notebook properly one would need the 3 additional files poisson.py, ideal_gas_md_hist.dat and coulomb_gas_md_hist.dat, which hold the MD data to compare to and help to solve the poisson equation. The fluctuating_reactive_ek_validation.ipynb uses more time steps, which were used to create the data in the corresponding publication. In the performance folder, there are the scripts that were used to measure calculation time of the method in the bwunicluster. The measured times are also included here., In the espresso folder there is the note of the espresso commit used and the patch apllied to it. Also there are the scripts to run the ESPResSo simulations.

Identifier
DOI https://doi.org/10.18419/darus-2258
Related Identifier IsCitedBy https://doi.org/10.1016/j.jocs.2022.101770
Metadata Access https://darus.uni-stuttgart.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18419/darus-2258
Provenance
Creator Tischler, Ingo ORCID logo; Holm, Christian (ORCID: 0000-0003-2739-310X); Weeber, Rudolf ORCID logo; Kuron, Michael ORCID logo; Weik, Florian; Kaufmann, Robert
Publisher DaRUS
Contributor Tischler, Ingo; Holm, Christian
Publication Year 2022
Funding Reference DFG 358283783 - SFB 1333 ; DFG 390740016 - SimTech
Rights info:eu-repo/semantics/openAccess
OpenAccess true
Contact Tischler, Ingo (University of Stuttgart); Holm, Christian (University of Stuttgart)
Representation
Resource Type pystencils and ESPResSo script files; Dataset
Format text/plain; charset=US-ASCII; text/x-fixed-field; text/x-python; application/x-ipynb+json; application/octet-stream; application/x-sh; application/x-tar
Size 41; 7861; 4825; 141387; 147855; 900; 1345412; 458; 486; 7191; 3723; 2700; 4400; 41228; 14639; 739; 15554
Version 1.0
Discipline Chemistry; Natural Sciences; Physics