Raw sequences to test the transcriptional regulation of single bacterial strains related to their niche breadth. German Research Foundation (DFG), grant number: AOBJ: 63764

The study aims to describe transcriptional patterns of single bacterial strains concerning their niche breadths along a salinity gradient. The niche breadth allows classifying organisms along the generalist-specialist continuum where generalist species are species with a broad niche, whose fitness is distributed evenly across multiple environments. In contrast, specialists are species with a narrow niche whose fitness is restricted to a few environments. We determined the niche breadth of 11 bacterial strains based on their tolerance against salinity stress to test the hypothesis that generalist species exposed to changing salinity exhibit higher transcriptional regulation of genes involved in the resistance against salinity compared to specialist strains. In contrast, we expected that genes involved in core cellular functions such as biomass production will be less regulated in generalists compared to specialists.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012D27201862917371A71477BCE132349599A5320A9
Metadata Access https://data.blue-cloud.org/api/collections/D27201862917371A71477BCE132349599A5320A9
Provenance
Instrument NextSeq 500; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-84.053W, 30.015S, 10.141E, 54.264N)
Temporal Coverage Begin 2010-02-01T00:00:00Z
Temporal Coverage End 2018-01-01T00:00:00Z