The data published here were gathered in the framework of a multi-proxy-based study of paleotemperature (both marine and terrestrial), -salinity, and -ecosystem changes from the Little Belt (Site M0059). They cover the past ~8,000 years and contain only material from the uppermost subunits 1a and 1b encountered at Site M0059 (see e.g. Andrén et al. 2015). Four environmental zones (EZ1: oldest, freshwater conditions; EZ2 to EZ4 reflecting following salinity and ecosystem changes in the region) were identified in Kotthoff et al. (2017). The age model and the sedimentology are discussed in Kotthoff et al. (2017). The datasets comprise data for salinity proxies (diatoms, aquatic palynomorphs, diol index) and for water temperature proxies (foraminiferal Mg/Ca-ratios, long chain diol index and TEXL86) as well as temperature reconstruction based on pollen grains. It is discussed in Kotthoff et al. (2017) that applying and interpreting proxies in coastal environments and marginal seas needs particular caution. For example, foraminiferal Mg/Ca-ratios may have been influenced by contamination by authigenic coatings in the deeper intervals of the record. Lipid paleothermometers were probably influenced by significant changes in depositional settings in the Little Belt. References: Andrén, T., Jørgensen, B.B., Cotterill, C., and the Expedition 347 Scientists: Baltic Sea Paleoenvironment. Proceedings IODP, 347. College Station, TX (Integrated Ocean Drilling Program), https://doi.org/10.2204/iodp.proc.347.101.2015, 2015. Kotthoff, U., Groeneveld, J., Ash, J. L., Fanget, A.-S., Krupinski, N. Q., Peyron, O., Stepanova, A., Warnock, J., Van Helmond, N. A. G. M., Passey, B. H., Clausen, O. R., Bennike, O., Andrén, E., Granoszewski, W., Andrén, T., Filipsson, H. L., Seidenkrantz, M.-S., Slomp, C. P., and Bauersachs, T.: Reconstructing Holocene temperature and salinity variations in the western Baltic Sea region: a multi-proxy comparison from the Little Belt (IODP Expedition 347, Site M0059), Biogeosciences, 14, 5607–5632, https://doi.org/10.5194/bg-14-5607-2017, 2017.