Malabar datasets used in study "OTU quality from dissimilarity arrays"

Brief description of the datasets

These are 32 samples among 96 samples of Malabar with rbcL marker covering

4 locations (Bouée 13, Comprian, Jaquets and Teychan ),
4 seasons (summer, autumn, winter and spring) 2 water columns (pelagic high tide and benthic low tide)

which have been used for a study on OTU quality in Arcachon Bay.

hdf5 format

There is one file per sample, in hdf5 format. Its datasets (hdf5 vocabulary) are:

distances: pairwise distances between all reads in the sample (SW score) seqid: the sequences identifiers used throughout the different analysis word: the sequences themselves

naming of the samples

The sample names have been simplified as, for example,

Teychan Winter Pelagic

as, on top of 4 locations and seasons, there are two samples: one benthic and one pelagic at high tide.

For more information

See the description of Malabar project for further explanations, and figshare of study "OTU quality from dissimilarity arrays" for seeing further analysis from these data on diversity of diatoms in Arcachon Bay.

To download a dataset, just click on its link below. They can be downloaded one by one only.

HDF5 files for OTU-shape

Bouée13 Summer Pelagic Bouée13 Summer Benthic Bouée13 Automn Pelagic Bouée13 Automn Benthic Bouée13 Winter Pelagic Bouée13 Winter Benthic Bouée13 Spring Pelagic Bouée13 Spring Benthic

Comprian Summer Pelagic Comprian Summer Benthic Comprian Automn Pelagic Comprian Automn Benthic Comprian Winter Pelagic Comprian Winter Benthic Comprian Spring Pelagic Comprian Spring Benthic

Jacquets Summer Pelagic Jacquets Summer Benthic Jacquets Automn Pelagic Jacquets Automn Benthic Jacquets Winter Pelagic Jacquets Winter Benthic Jacquets Spring Pelagic Jacquets Spring Benthic

Teychan Summer Pelagic Teychan Summer Benthic Teychan Automn Pelagic Teychan Automn Benthic Teychan Winter Pelagic Teychan Winter Benthic Teychan Spring Pelagic Teychan Spring Benthic