Polysaccharides quantified in sediment cores from coastal vegetated ecosystems

DOI

50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. Polysaccharides were screened using microarray analysis following the method described by Vidal-Melgosa et al. (2022). Briefly, sediment extracts from MilliQ-water and EDTA were combined in equal volumes, and 30 µL of the mixture was transferred into wells of 384-microwell plates. Two consecutive two-fold dilutions were performed using a printing buffer (55.2% glycerol, 44% water, 0.8% Triton X-100). The plates were then centrifuged at 3,500 × g for 10 minutes at 15 °C. Each microarray was individually probed with a monoclonal antibody (mAb), and binding was detected using a secondary antibody conjugated to alkaline phosphatase. In the presence of its substrate, this reaction produced a colorimetric signal. Developed arrays were scanned at 2400 dots per inch, and binding signal intensity was quantified using Array-Pro Analyzer 6.3 software (Media Cybernetics).

Identifier
DOI https://doi.pangaea.de/10.1594/PANGAEA.979911
Related Identifier References https://doi.org/10.1101/2022.03.04.483023
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.979911
Provenance
Creator Hellige, Inga ORCID logo; Akeerath Mundanatt, Aman
Publisher PANGAEA
Publication Year 2025
Funding Reference Federal Ministry of Education and Research https://doi.org/10.13039/501100002347 Crossref Funder ID 03F0896E https://foerderportal.bund.de/foekat/jsp/SucheAction.do?actionMode=view&fkz=03F0896E DAM CDRmare - sea4soCiety, University of Bremen
Rights Creative Commons Attribution 4.0 International; Data access is restricted (moratorium, sensitive data, license constraints); https://creativecommons.org/licenses/by/4.0/
OpenAccess false
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 782 data points
Discipline Earth System Research
Spatial Coverage (-75.683W, 10.137S, 11.022E, 54.692N); Colombia
Temporal Coverage Begin 2021-11-08T00:00:00Z
Temporal Coverage End 2022-08-30T00:00:00Z