16S rRNA gene amplicon sequencing of seawater treated with oil and additives from Helgoland (Germany)

Biosurfactants are a promising alternative for chemical dispersants to combat marine oil spills. The German Bight is characterized as a shallow, densely navigated basin. This 16S rRNA gene amplicon sequencing study aimed at identifying the impacts of a biosurfactant (i.e., rhamnolipid) and of chemical dispersants (i.e., Corexit 9500 and Slickgone NS) on the composition of the microbial community from North Sea seawater. 16S rRNA genes were amplified using universal primers 515F and 806R. Subsequent library preparation steps (Nextera, Illumina) and 250 bp paired-end sequencing with MiSeq (Illumina, San Diego, CA, USA) using v2 chemistry were performed.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012E04F6ADC3CCD7BA7EE8677D96E384B5CBFE9C35E
Metadata Access https://data.blue-cloud.org/api/collections/E04F6ADC3CCD7BA7EE8677D96E384B5CBFE9C35E
Provenance
Instrument Illumina MiSeq; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (7.896W, 54.184S, 7.896E, 54.184N)
Temporal Point 2017-04-17T00:00:00Z