Quantitative monitoring of environmental DNA using high-throughput sequencing

The goal of this project is to monitor the dynamics of environmental DNA (e.g., fish DNA found in a water sample) quantitatively. By adding internal standard DNA, a standard curve (i.e., the relationship between the number of DNA copy and sequence read) will be drawn. Based on the standard curve, sequence reads of unknown DNA (non-standard DNA) will be converted to the number of DNA copy. The environmental DNA metabarcoding combined with internal standard DNA will enable quantitative monitoring of multispecies environmental DNA.

Identifier
Source https://data.blue-cloud.org/search-details?step=~01231AE136AA9BEC48ABEFA74F7CC8F1E47BAD20D60
Metadata Access https://data.blue-cloud.org/api/collections/31AE136AA9BEC48ABEFA74F7CC8F1E47BAD20D60
Provenance
Instrument Illumina MiSeq; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor Department of Environmental Solution Technology, Faculty of Science and Technology, Joint Research Center for Science and Technology, Ryukoku University
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (135.367W, 35.467S, 135.367E, 35.467N)
Temporal Coverage Begin 2015-04-07T00:00:00Z
Temporal Coverage End 2016-03-29T00:00:00Z