27 datasets found

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

Campylobacter genome sequencing

Veterinary Pathogens sequenced as part of the effort to Combat Antibiotic Resistant Bacteria

For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/campylobacter-jejuni.html This data is part of a pre-publication release....

We present a description of draft genomes (MAGs) in the rumen of goat kids at 1, 7, 14, 28, 42, 56, 70 and 84 days of age

Veterinary Pathogens sequenced as part of the effort to Combat Antibiotic Resistant Bacteria

Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground...

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

This project involved sequencing some bacterial isolates from ATCC (https://www.atcc.org) to test ONT-only analysis methods.

Exemplary sequences of human outbreak strains from the Danish surveillance of foodborne bacterial pathogens e.g. Salmonella, STEC, Listeria

Bacterial identification run in house at UCLA

Pathogenic bacteria encounter a variety of stressful host environments during infection. Their responses to meet these challenges protect them from deadly damages and aid in...

Five foodborne pathogens were sequenced using the iSeq100, MiSeq, and MinION. Each set of reads was assembled independently and in combination to compare genome assembly quality...

Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab

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Isolates collected during the IID1 and IID2 studies will be subjected to a well-established pipeline leading to whole genome sequencing (WGS) using the Illumina MiSeq platform....

Veterinary Pathogens sequenced as part of the effort to Combat Antibiotic Resistant Bacteria

University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. coli,...

Veterinary Pathogens sequenced as part of the effort to Combat Antibiotic Resistant Bacteria