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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
CDC HAI-Seq Enterococcus species
CDC’s Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Enterococcus spp. We have implemented a standard scheme for isolate/sample... -
Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substant...
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing... -
Metagenomes containing bacteria from positive blood culture broths in patient...
Metagenomes containing bacteria from positive blood culture broths in patients with sepsis -
ARGA: Antibiotic Resistance Gene Analysis in CHUAC
Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project... -
GenomeTrakr Project: West Virginia Department of Agriculture
Whole genome sequencing of cultured research organisms as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens. -
Bacterial isolates from Natural Cat Food Diets
WGS of bacterial isolates from Natural Cat Food Diets -
A StrainAtlas of the human gut microbiome
A cultured isolate collection from a broad human population -
Drakenstein12internal
This is a large scale project with the sequencing co-funded by collaborators at the University of Cape Town and WT Core (I2818). This is a project aimed at deepening our... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Single-molecule detection of N6-methyladenine in microbial reference materials
N6-methyladenosine (m6A) is among the most common bacterial base modifications. Detection at single base resolution is possible using single-molecule sequencing with PacBio and... -
Various isolates of Bacteroides, Streptococcus, Clostridium, Klebsiella, Ente...
WGS sequencing of various bacterial isolates which were collected from mouse stool and clinical human colon samples. -
MetaPDOcheese 4: Whole genome of bacterial isolates from cheeses and milks
The genomic dataset consists of 373 bacterial strains spanning 3 phyla (172 Actinomycetota, 6 Bacillota and 195 Pseudomonadota), 17 genera and 47 species, isolated from French... -
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Ultra-deep, long-read nanopore sequencing of mock microbial community standards -
Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support... -
Staphylococcus aureus subsp. aureus 15981 Transcriptome or Gene expression
Complete transcriptome analysis of Staphylococcus aureus. -
The isolates from feces in Felidae
The isolates from feces in Felidae -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
BactID
Bacterial identification run in house at UCLA