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Microbiome in coral skeleton at Tuvalu
Coral skeletons record the past environmental signals. Microbiome based on SSU rRNA genes were investigated in the coral skeleton, which obtained from Tuvalu and recorded annual... -
16S metagenomic analysis of the biogeographic changes associated with Salmone...
The aim of this study was to characterize the microbiome of various gastrointestinal locations (small intestine, large intestine, and feces) in swine using 16S sequencing... -
Bacterial composition in precipitation collected in Japan over one and half y...
We investigate the communities of the precipitation-mediated bacteria based on culture-independent techniques using 30 precipitation samples that captured over one and half... -
PacBio sequencing of 16S-ITS-23S rRNA operon amplicons
Amplicon sequencing of the 16S rRNA gene is the predominant method to quantify microbial compositions and to discover novel lineages. However, traditional short amplicons often... -
16S and 18S rRNA amplicon data for the Multidisciplinary drifting Observatory...
16S and 18S rRNA amplicon data for seawater, sea ice, and experimental samples collected during the 2019-2020 MOSAiC expedition in the central Arctic Ocean -
Multi-marker eDNA metabarcoding for non-indigenous species identification.
Here we tested the use of environmental-DNA (eDNA) metabarcoding on multiple molecular markers (i.e., 18S V4, 18S V7, 18S V9 rRNA, COI and rbcL) on seawater and sediment samples... -
Investigation of duckweed microbial communities
Investigation of duckweed (Landotia punctata) microbial communities using 16S metagenomic sequencing.</p><p>L. punctata growing in natural and nutrient-deficient... -
Seasonal dynamics of epiphytic microbial communities on marine macrophyte sur...
Surfaces of marine macrophytes (seagrasses and macroalgae) are inhabited by diverse microbial communities. Most studies focusing on epiphytic communities of macrophytes did not... -
Semi-quantitative characterisation of mixed pollen samples with genome skims ...
The ability to identify the constituent plant species that make up a mixed-species sample of pollen has important applications in ecology, conservation, agriculture, and other... -
Microbiome single cell atlases generated with a commercial instrument
This project described a novel high throughput single bacteria sequencing method. -
River and stream bacterial communities in a large urban-to-rural watershed
This study evaluates bacterial communities from rivers and streams in the Milwaukee river watershed, a large mixed land use watershed. The goal was to determine how microbial... -
Strongylocentrotus purpuratus microbiome raw sequence reads 16S rDNA
Organisms rely on a network of microbes that seed the host body and are maintained via a shared relationship which is often times a consortial symbiosis. Marine invertebrates,... -
Evaluation of PCR conditions for characterizing bacterial community with full...
Our study concerns the reliability of techniques for obtaining accurate and quantitative full-length 16S rRNA amplicon sequencing data on bacterial community structure with... -
Monthly time-series analysis of the marine microbial community from surface t...
This study primarily evaluates the monthly dynamics of the marine microbial community at the San Pedro Ocean Time-series station (SPOT near Los Angeles, CA, USA). Other marine... -
Direct meta-analyses reveal unexpected microbial life in the highly radioacti...
The pools of nuclear reactors facilities constitute harsh environments for life, bathed with ionizing radiations, filled with demineralized water and containing toxic... -
Evaluating the diversity and activity of marine archaea via 16S rRNA gene and...
This study evaluates the diversity and activity of marine archaea via 16S rRNA gene and transcript sequencing. This method is complementary to evaluation of the activity of... -
Metagenomics genotype and phenotype association analysis on DNA modification
This study applies the Metagenomics Genotype and Phenotype Association studies (MetaGPA) to identify novel DNA modification form or DNA modifying enzyme from environmental phage... -
Comparison of next-generation sequencing methods for catfish bacterial microb...
Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial... -
The detection of eDNA from all 19 species and subspecies of the genus Anguilla
The goal in my study is to develop a set of universal genus-spesific PCR primers for eDNA metabarcoding in order to correctly distinguish the eDNA of all the 19 species and... -
Protist biodiversity (18S V9) across Indo-Pacific
Water and sediment samples collected from coastal marine ecosystems across Indonesia to assess the biodiversity and structure of protist communities in the Indo-Pacific.