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RNAseq for Rainbow Trout tissues
The European project AQUA-FAANG aims to improve understanding the genome function and usage of genotype-to-phenotype prediction in the six most important European farmed fish... -
16S raw sequence reads derived from rainbow trout
The salmonid gastrointestinal tract microbial community is largely dominated by Mycoplasma sp., however, the biological advantage that the host draws from this association is... -
Upper McCloud River Redband Trout raw sequencing reads
This project is investigating population structure of Upper McCloud River Redband Trout along with designing SNPtype genotyping assays in order to monitor their genetic... -
Oncorhynchus mykiss Raw sequence reads
Anadromous Oncorhynchus mykiss used in Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss) -
Oncorhynchus mykiss Raw sequence reads
Normal transcriptome sequencing of normal rainbow trout -
Comprehensive analysis of immune parameters, mRNA/miRNA profiles, and immune ...
Rainbow trout (Oncorhynchus mykiss) is a species of cold-water fish with important economic values, which is widely cultivated around the world. It is susceptible to infectious... -
A Multi Omics Approach Unravels Metagenomic and Metabolic Alterations of a Pr...
Background Animal protein production is increasingly looking towards microbiome associated services such as the design of new and better probiotic solutions to further improve... -
Topographical mapping the rainbow trout (Oncorhynchus mykiss) microbiome
This study gives a complete map of the bacterial mucosal microbiome of hatchery rainbow trout at five different body sites. We find bacteria with antifungal properties, which... -
RNA-seq of RTS11 Macrophage-like cell line treated with Beta-glucans against ...
This experiment focused on the transcriptomic responses of the rainbow trout spleen macrophage-like cell line (RTS11) in response to ß-glucans (M-glucans, Biotec). RTS11 was... -
Transcriptomic sequencing of rainbow trout under heat stress and taxifolin tr...
The analysis of transcriptomic response of rainbow trout (Oncorhynchus mykiss) to increasing ambient temperature with and without the addition of taxifolin to the feed. -
Gene expression profiling of long non-coding RNAs between rainbow trout strai...
Rainbow trout (Oncorhynchus mykiss) and other salmonids are piscivorous fish. In aquaculture, fish-based feed ingredients are rapidly becoming unsustainable due to increased... -
Parallel introgression and selection on introduced alleles in a native species
As humans cause the redistribution of species ranges, hybridization between previously allopatric species is on the rise. Such hybridization can have complex effects on overall... -
Ab repertoire of VHSV vaccinated trout (synthetic strain)
Deep sequencing of IgM expressed in the spleen after VHSV vaccination -
Development and Organization of Secondary Lymphoid Tissue
RNA-Seq of vertebrate representatives in order to understand the development and organization of mucosal secondary lymphoid tissue. -
Oncorhynchus mykiss Red Blood Cells _ Transcriptome sequencing and assembly
Transcriptome assembly data for Oncorhynchus mykiss red blood cells -
Effect of cryopreservation on DNA methylation in rainbow trout spermatozoa.
Sperm cryopreservation is a widely used biotechnology in fish. In the spermatozoa, DNA bears the genotype of the donor male, whose transmission to the progeny will allow the... -
Using RAD Tags Sequencing for Detecting and Validating QTL Affecting Bacteria...
Bacterial cold water disease (BCWD) causes significant economic loss in salmonid aquaculture. Using microsatellites genome scan we have previously detected highly significant... -
Oncorhynchus mykiss Raw sequence reads
Fastq files (batch_2) from Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss). -
Identification and validation of structural variants in rainbow trout
Genomic structural variants (SVs) are a major source of genetic and phenotypic variation but have not been investigated systematically in rainbow trout. The objectives of this... -
whole genomic data from iteroparous steelhead trout
whole genomic data from iteroparous steelhead trout