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Improving Metabarcoding Taxonomic Assignment: A Case Study of Fishes in a Lar...
Reference Barcodes for California Current Large Marine Ecosystem Fishes generated using the MiFish 12S Universal and Elasmobranch primer sets. Both vouchered and unvouchered... -
Fishing for genes that affect efficiency of gynogenesis in rainbow trout (Onc...
Gynogenetic development in fish is induced by activation of eggs with irradiated spermatozoa followed by exposure of the activated eggs to the temperature or high hydrostatic... -
Transcriptomic investigation on how UV-327 affect rainbow trout alevins
Newly fertilized rainbow trout embryos microinjected with a single dose of UV-327 (2,4-di-tert-butyl-6-(5-chloro-2H-benzotriazol-2-yl) phenol), reared until and sampled at... -
Dietary filamentous fungi (Neurospora intermedia) and duration of feeding mod...
Microbial proteins including filamentous fungal biomass contain noticeable levels of protein, fatty acids and other nutritious components. Also fungi cell wall contains chitin... -
Large scale metagenome assembly reveals novel animal-associated microbial div...
Large-scale metagenome assemblies of human microbiomes have produced a huge catalogue of previously unseen genomic data, but has been applied to only a few of the >66 000... -
Rainbow trout (Oncorhynchus mykiss) gonad transcriptome
Reference sequence of transcriptome expressed in the genital ridge, testis and ovary of rainbow trout. -
Induced androgenetic development of rainbow trout - transcriptome analysis of...
Ionizing radiation (IR) is applied to inactivate nuclear genome in the rainbow trout (Oncorhynchus mykiss) eggs during androgenesis. However, it has been considered that doses... -
Hepatic fatty acid and transcriptome profiles during the transition from vege...
Traditional aquafeeds contain high amount of fish oil that increase heart-healthy omega-3 fats in the rainbow trout fillet. Transition to more sustainable plant oils reduces... -
Effect of a pulsed magnetic field on gene expression in the retina of rainbow...
In this study we are looking at differential expression of genes in the retina of rainbow trout after exposure to a brief magnetic pulse. The goal is to identify genes... -
Single nucleotide polymorphism (SNP) discovery in rainbow trout (Oncorhynchus...
Background: Our goal is to produce a high-throughput SNP genotyping platform for genomic analyses in rainbow trout that will enable fine mapping of QTL, whole genome association... -
Exploring the impact of bacterial DNA variation in fish microbiome studies
Next generation sequencing (NGS) has become a popular tool to investigate the bacterial microflora colonising fish. Despite the significant advances made in the field of NGS,... -
Inflammation of gill epithelia in fish causes increased permeation of polar o...
The epithelial cell layer that lines the fish gill controls the paracellular permeation of chemicals through tight junctions. The integrity of tight junctions can be affected by... -
Age at maturity in steelhead (anadromous Oncorhynchus mykiss)
Age at maturity in steelhead (anadromous Oncorhynchus mykiss) samples originate in the Columbia River basin (Oncorhynchus mykiss gairdneri) from three hatcheries: Pashimeroi,... -
Effects of dietary inclusion of Tenebrio molitor meal on rainbow trout gut an...
The present research aimed to investigate the effects of different percentages of replacement of fishmeal with Tenebrio molitor (TM) meal in the diet of rainbow trout... -
Metagenomics of the mid- and hind-gut of rainbow trout gastrointestinal tract...
Rainbow trout is an important aquaculture species. Feeding alternative diet to replace the conventional fishmeal diet has been the focus in aquaculture nutrition. This study... -
Integrative mRNA-miRNA interaction analysis associated with the immune respon...
Infectious hematopoietic necrosis virus (IHNV) can cause widespread death of rainbow trout (Oncorhynchus mykiss), understanding the molecular mechanisms that occur in the... -
Oncorhynchus mykiss strain:Walbaum Transcriptome or Gene expression
Phosphorus (P) deficiency triggers undermineralization of bone and vertebral deformities. To better understand the regulation of the vertebral bone, we undertook the sequencing... -
Combined application of whole transcriptome sequencing and ceRNA theory: lncR...
Hypoxia is a tricky and unavoidable environmental stressor for aquaculture with ongoing ecological deterioration and increasing stocking density, resulting in serious economic... -
Transcriptomic points of departure calculated from rainbow trout gill, liver,...
The primary objective of this study was to determine if quantitative tPOD values could be derived from chemical exposure studies that followed OECD Test No. 249 (rainbow trout... -
whole genome resequencing of Columbia Basin steelhead trout
whole genome resequencing of Columbia Basin steelhead trout samples chosen as exemplars of geographic and population genetic variation across the basin