Improving Metabarcoding Taxonomic Assignment: A Case Study of Fishes in a Large Marine Ecosystem
Reference Barcodes for California Current Large Marine Ecosystem Fishes generated using the MiFish 12S Universal and Elasmobranch primer sets. Both vouchered and unvouchered sequences.
- Acanthocybium solandri
- Acanthogobius flavi...
- Acipenser transmont...
- Agonomalus mozinoi
- Agonopsis sterletus
- Albatrossia pectoralis
- Albula vulpes
- Alepocephalus teneb...
- Alloclinus holderi
- Allocyttus folletti
- Allothunnus fallai
- Alopias pelagicus
- Alopias superciliosus
- Alosa sapidissima
- Amblyraja badia
- Amblyraja hyperborea
- Amphistichus argenteus
- Amphistichus koelzi
- Amphistichus rhodot...
- Anarrhichthys ocell...
- Anchoa compressa
- Anchoa delicatissima
- Anisotremus davidsonii
- Anoplarchus insignis
- Anoplarchus purpure...
- Anoplogaster cornuta
- Anoplopoma fimbria
- Anotopterus pharao
- Antimora microlepis
- Aphanopus arigato
- Apodichthys flavidus
- Apogon guadalupensis
- Apogon pacificus
- Apristurus brunneus
- Apristurus kampae
- Argentina sialis
- Argyropelecus acule...
- Argyropelecus lychnus
- Argyropelecus sladeni
- Ariosoma gilberti
- Aristostomias scint...
- Artedius corallinus
- Artedius harringtoni
- Artedius notospilotus
- Assurger anzac
- Astroscopus zephyreus
- Atheresthes stomias
- Atherinops affinis
- Atherinopsis califo...
- Aulorhynchus flavidus
- Auxis rochei
- Auxis thazard
- Avocettina infans
- Azurina hirundo
- Bajacalifornia burr...
- Barbourisia rufa
- Bathophilus brevis
- Bathophilus flemingi
- Bathyagonus alascanus
- Bathyagonus nigripi...
- Bathyagonus pentaca...
- Bathylagoides wesethi
- Bathyraja abyssicola
- Bathyraja interrupta
- Bathyraja trachura
- Bathysphyraenops si...
- Bellator xenisma
- Benthalbella dentata
- Beringraja binoculata
- Beringraja inornata
- Beringraja rhina
- Beringraja stellulata
- Bertella idiomorpha
- Blepsias cirrhosus
- Bolinichthys longipes
- Borostomias panamensis
- Bothrocara brunneum
- Bothrocara molle
- Brachygenys califor...
- Brachyistius frenatus
- Brosmophycis marginata
- Calamus brachysomus
- Caranx caninus
- Caranx sexfasciatus
- Caranx vinctus
- Carcharhinus longim...
- Carcharodon carcharias
- Careproctus cypselurus
- Careproctus melanurus
- Caristius macropus
- Cataetyx rubrirostris
- Caulolatilus princeps
- Cebidichthys violaceus
- Centrobranchus nigr...
- Cephaloscyllium ven...
- Ceratias holboelli
- Ceratoscopelus town...
- Chaenophryne longiceps
- Chaenophryne melano...
- Chaenopsis alepidota
- Chaetodipterus zonatus
- Chaetodon humeralis
- Chanos chanos
- Chauliodus macouni
- Cheilopogon pinnati...
- Cheilotrema saturnum
- Chesnonia verrucosa
- Chiasmodon subniger
- Chilomycterus retic...
- Chirolophis decoratus
- Chirolophis nugator
- Chitonotus pugetensis
- Chloroscombrus orqueta
- Chromis alta
- Chromis punctipinnis
- Citharichthys sordidus
- Citharichthys stigm...
- Citharichthys xanth...
- Clidoderma asperrimum
- Clinocottus acuticeps
- Clinocottus analis
- Clinocottus embryum
- Clinocottus globiceps
- Clinocottus recalvus
- Clupea pallasii
- Coelorinchus scapho...
- Cololabis saira
- Congriscus megastomus
- Coralliozetus sprin...
- Coryphaenoides acro...
- Coryphaenoides filifer
- Coryphaenoides yaqu...
- Cosmocampus arctus
- Cottus aleuticus
- Cottus asper
- Cryptacanthodes ale...
- Cryptacanthodes gig...
- Ctenogobius sagittula
- Cubiceps baxteri
- Cyclothone acclinidens
- Cyclothone atraria
- Cyclothone pallida
- Cyclothone pseudopa...
- Cyema atrum
- Cymatogaster aggregata
- Cynoscion parvipinnis
- Danaphos oculatus
- Decapterus muroadsi
- Decodon melasma
- Dermatolepis dermat...
- Desmodema lorum
- Diaphus anderseni
- Diaphus theta
- Diodon holocanthus
- Diodon hystrix
- Diogenichthys atlan...
- Diogenichthys later...
- Diplectrum maximum
- Diplophos taenia
- Diplospinus multist...
- Dolichopteryx longipes
- Dormitator latifrons
- Dorosoma petenense
- ELIXIR ENA
- Echeneis naucrates
- Elassodiscus caudatus
- Electrona risso
- Elops affinis
- Embassichthys bathy...
- Embiotoca caryi
- Embiotoca jacksoni
- Embiotoca lateralis
- Engraulis mordax
- Enophrys bison
- Entosphenus trident...
- Eopsetta jordani
- Epinephelus analogus
- Eptatretus deani
- Eptatretus stoutii
- Erilepis zonifer
- Esselenichthys carli
- Eucinostomus argenteus
- Eucinostomus currani
- Eucinostomus gracilis
- Eucryphycus califor...
- Euprotomicrus bispi...
- Euprotomicrus sp ZG...
- Eurypharynx pelecan...
- Eustomias sp ZG 2021
- Euthynnus lineatus
- Facciolella equator...
- Fistularia corneta
- Fodiator acutus
- Fowlerichthys avalonis
- Fundulus parvipinnis
- Gadus chalcogrammus
- Gadus macrocephalus
- Galeocerdo cuvier
- Galeorhinus galeus
- Gasterosteus aculeatus
- Genyonemus lineatus
- Gibbonsia elegans
- Gibbonsia metzi
- Gibbonsia montereye...
- Gigantactis vanhoef...
- Gillichthys mirabilis
- Girella nigricans
- Glyptocephalus zach...
- Gobiesox maeandricus
- Gobiesox rhessodon
- Gonichthys tenuiculus
- Gymnothorax mordax
- Gymnura marmorata
- Haemulon flaviguttatum
- Halargyreus johnsonii
- Halichoeres califor...
- Halichoeres semicin...
- Harengula thrissina
- Hemanthias signifer
- Hemilepidotus hemil...
- Hemilepidotus spinosus
- Hemiramphus saltator
- Heterodontus francisci
- Heterostichus rostr...
- Hexagrammos decagra...
- Hexagrammos lagocep...
- Hexagrammos stelleri
- Hexanchus griseus
- Himantolophus sagamius
- Hippocampus ingens
- Hippoglossina stomata
- Hippoglossoides ela...
- Hippoglossus stenol...
- Hirundichthys ronde...
- Holtbyrnia latifrons
- Hydrolagus colliei
- Hygophum atratum
- Hygophum proximum
- Hypanus dipterurus
- Hyperprosopon argen...
- Hyperprosopon ellip...
- Hypomesus pretiosus
- Hyporhamphus naos
- Hyporthodus acanthi...
- Hyporthodus niphobles
- Hypsoblennius gentilis
- Hypsoblennius gilberti
- Hypsoblennius jenkinsi
- Hypsopsetta guttulata
- Hypsypops rubicundus
- Icelinus burchami
- Icelinus cavifrons
- Icelinus filamentosus
- Icelinus fimbriatus
- Icelinus oculatus
- Icelinus quadriseri...
- Icelinus tenuis
- Ichthyococcus irreg...
- Icichthys lockingtoni
- Icosteus aenigmaticus
- Idiacanthus antrost...
- Isopsetta isolepis
- Istiophorus platypt...
- Isurus oxyrinchus
- Kajikia audax
- Kali kerberti
- Kasatkia seigeli
- Katsuwonus pelamis
- Kyphosus azureus
- Kyphosus ocyurus
- Labrisomus xanti
- Lactoria diaphana
- Lagocephalus lagoce...
- Lamna ditropis
- Lampadena urophaos
- Lampanyctus festivus
- Lampanyctus parvicauda
- Lampanyctus tenuifo...
- Lampris guttatus
- Leiocottus hirundo
- Lepidocybium flavob...
- Lepidogobius lepidus
- Lepidopsetta bilineata
- Lepidopus fitchi
- Leptocottus armatus
- Lestidiops pacificus
- Lestidiops ringens
- Lethops connectens
- Leuresthes tenuis
- Leuroglossus stilbius
- Liparis florae
- Liparis fucensis
- Liparis mucosus
- Liparis pulchellus
- Lipariscus nanus
- Lipolagus ochotensis
- Lobianchia gemellarii
- Lobotes pacificus
- Lophiodes caulinaris
- Lophiodes spilurus
- Lophodolos acanthog...
- Lophotus capellei
- Lophotus lacepede
- Loweina rara
- Lumpenus sagitta
- Lutjanus argentiven...
- Lutjanus colorado
- Lutjanus novemfasci...
- Lutjanus peru
- Luvarus imperialis
- Lycenchelys camchatica
- Lycenchelys crotalinus
- Lycodapus fierasfer
- Lycodapus mandibularis
- Lycodes cortezianus
- Lycodes diapterus
- Lycodopsis pacificus
- Lyconema barbatum
- Lyopsetta exilis
- Lythrypnus dalli
- Lythrypnus zebra
- Macroparalepis john...
- Macropinna microstoma
- Macroramphosus grac...
- Magnisudis atlantica
- Makaira nigricans
- Masturus lanceolatus
- Maulisia mauli
- Medialuna californi...
- Megachasma pelagios
- Melamphaes acanthomus
- Melamphaes laeviceps
- Melamphaes lugubris
- Melamphaes parvus
- Melamphaes simus
- Melamphaes suborbit...
- Melanocetus johnsonii
- Melanonus zugmayeri
- Melanostigma pammelas
- Melichthys niger
- Menticirrhus undulatus
- Merluccius productus
- Microgadus proximus
- Microlepidotus inor...
- Micrometrus aurora
- Micrometrus minimus
- Microstoma microstoma
- Microstomus pacificus
- Mirorictus taningi
- Mobula japanica
- Mobula thurstoni
- Mola alexandrini
- Mola mola
- Mola tecta
- Morone saxatilis
- Mugil cephalus
- Mugil setosus
- Mulloidichthys dent...
- Mustelus californicus
- Mustelus henlei
- Mustelus lunulatus
- Mycteroperca jordani
- Mycteroperca xenarcha
- Myctophum aurolater...
- Myctophum lychnobium
- Myctophum nitidulum
- Myliobatis californica
- Myrophis vafer
- Nannobrachium bristori
- Nannobrachium hawai...
- Nannobrachium regale
- Nannobrachium ritteri
- Nansenia candida
- Naucrates ductor
- Nautichthys oculofa...
- Nectoliparis pelagicus
- Nematistius pectoralis
- Nemichthys scolopaceus
- Neoclinus blanchardi
- Nezumia liolepis
- Nicholsina denticulata
- Nomeus gronovii
- Notolychnus valdiviae
- Notorynchus cepedianus
- Notoscopelus resple...
- Odontopyxis trispinosa
- Oligocottus maculosus
- Oligocottus snyderi
- Oncorhynchus gorbuscha
- Oncorhynchus keta
- Oncorhynchus kisutch
- Oncorhynchus mykiss
- Oneirodes acanthias
- Oneirodes eschrichtii
- Oneirodes thompsoni
- Ophichthus triserialis
- Ophichthus zophochir
- Ophidion scrippsae
- Ophiodon elongatus
- Opisthonema libertate
- Opisthonema medirastre
- Opostomias mitsuii
- Orthonopias triacis
- Oxylebius pictus
- Paraclinus integrip...
- Paralabrax aurogutt...
- Paralabrax clathratus
- Paralabrax maculato...
- Paralabrax nebulifer
- Paralichthys califo...
- Paraliparis pectoralis
- Paranthias colonus
- Parmaturus xaniurus
- Parophrys vetulus
- Parvilux ingens
- Pentaceros wheeleri
- Peprilus simillimus
- Phanerodon atripes
- Phanerodon furcatus
- Phanerodon vacca
- Pholis clemensi
- Pholis laeta
- Pholis ornata
- Photonectes margarita
- Phtheirichthys line...
- Physiculus rastrell...
- Phytichthys chirus
- Plagiotremus azaleus
- Platichthys stellatus
- Platyrhinoidis tris...
- Plectobranchus evides
- Pleurogrammus monop...
- Pleuronichthys coen...
- Pleuronichthys decu...
- Pleuronichthys ritteri
- Pleuronichthys vert...
- Podothecus accipens...
- Polydactylus approx...
- Pomacanthus zonipectus
- Porichthys notatus
- Poroclinus rothrocki
- Poromitra crassiceps
- Prionace glauca
- Prionotus stephanop...
- Pristigenys serrula
- Prognathodes falcifer
- Pronotogrammus mult...
- Protomyctophum croc...
- Protomyctophum thom...
- Psenes pellucidus
- Psettichthys melano...
- Pseudobathylagus mi...
- Pseudobatos productus
- Pseudupeneus grandi...
- Psychrolutes phrictus
- Pteraclis aesticola
- Pteroplatytrygon vi...
- Quietula y cauda
- Radulinus asprellus
- Ranzania laevis
- Rathbunella hypoplecta
- Regalecus glesne
- Reinhardtius hippog...
- Remora australis
- Remora brachyptera
- Remora osteochir
- Remora remora
- Remorina albescens
- Rhacochilus toxotes
- Rhamphocottus richa...
- Rhincodon typus
- Rhinogobiops nicholsii
- Rhinoliparis barbul...
- Rhizoprionodon long...
- Rimicola muscarum
- Roncador stearnsii
- Rosenblattichthys v...
- Ruscarius creaseri
- Ruvettus pretiosus
- Sagamichthys abei
- Sarda chiliensis
- Sardinops sagax
- Scomber japonicus
- Scomberomorus concolor
- Scomberomorus sierra
- Scopelarchus analis
- Scopelarchus guentheri
- Scopelogadus bispin...
- Scopelosaurus harryi
- Scorpaena guttata
- Scorpaena mystes
- Scorpaenichthys mar...
- Scorpaenodes xyris
- Sebastes babcocki
- Sebastes borealis
- Sebastes constellatus
- Sebastes diploproa
- Sebastes eos
- Sebastes flavidus
- Sebastes gilli
- Sebastes goodei
- Sebastes lentiginosus
- Sebastes macdonaldi
- Sebastes melanosema
- Sebastes phillipsi
- Sebastes proriger
- Sebastes rastrelliger
- Sebastes reedi
- Sebastes rosenblatti
- Sebastes ruberrimus
- Sebastes rufus
- Sebastes saxicola
- Sebastes semicinctus
- Sebastes serriceps
- Sebastes wilsoni
- Sebastolobus alascanus
- Sebastolobus altivelis
- Selene brevoortii
- Selene peruviana
- Semicossyphus pulcher
- Seriola lalandi dor...
- Seriola rivoliana
- Seriphus politus
- Serrivomer jesperseni
- Serrivomer sector
- Somniosus pacificus
- Sphoeroides annulatus
- Sphoeroides lobatus
- Sphyraena argentea
- Sphyraena ensis
- Sphyrna lewini
- Sphyrna zygaena
- Spirinchus starksi
- Squalus acanthias
- Squatina californica
- Stellerina xyosterna
- Stemonosudis macrura
- Stenobrachius leuco...
- Stereolepis gigas
- Sternoptyx diaphana
- Sternoptyx obscura
- Sternoptyx pseudobs...
- Stomias atriventer
- Strongylura exilis
- Sudis atrox
- Sufflamen verres
- Symbolophorus calif...
- Symbolophorus everm...
- Symphurus atricaudus
- Synchiropus atrilab...
- Synchirus gilli
- Syngnathus auliscus
- Syngnathus californ...
- Syngnathus exilis
- Syngnathus leptorhy...
- Synodus lacertinus
- Synodus lucioceps
- Taaningichthys bath...
- Tactostoma macropus
- Talismania bifurcata
- Taractes asper
- Tarletonbeania cren...
- Tetragonurus cuvieri
- Tetrapturus angusti...
- Tetronarce californica
- Thaleichthys pacificus
- Thunnus alalunga
- Thunnus albacares
- Thunnus obesus
- Trachinotus paitensis
- Trachinotus rhodopus
- Trachipterus altivelis
- Trachurus symmetricus
- Triakis semifasciata
- Trichiurus nitens
- Trichodon trichodon
- Triphoturus mexicanus
- Triphoturus nigrescens
- Typhlogobius califo...
- Umbrina roncador
- Uraspis helvola
- Urobatis halleri
- Valenciennellus tri...
- Vinciguerria lucetia
- Vinciguerria nimbaria
- Vinciguerria poweriae
- Xanthichthys mento
- Xeneretmus leiops
- Xeneretmus ritteri
- Xiphias gladius
- Xiphister atropurpu...
- Xiphister mucosus
- Xystreurys liolepis
- Zalembius rosaceus
- Zalieutes elater
- Zaniolepis frenata
- Zaniolepis latipinnis
- Zaprora silenus
- Zapteryx exasperata
- Zesticelus profundorum
- Zu cristatus
| Provenance | |
|---|---|
| Instrument | AB 5500 Genetic Analyzer; ABI_SOLID |
| Publisher | Blue-Cloud Data Discovery & Access service; ELIXIR-ENA |
| Contributor | NOAA NWFSC |
| Publication Year | 2024 |
| OpenAccess | true |
| Contact | blue-cloud-support(at)maris.nl |
| Representation | |
|---|---|
| Discipline | Marine Science |
| Spatial Coverage | (-179.363W, -32.130S, 152.082E, 63.750N) |
| Temporal Coverage Begin | 1905-06-15T00:00:00Z |
| Temporal Coverage End | 2019-06-03T00:00:00Z |