-
Oncorhynchus mykiss Transcriptome or Gene expression
cDNA was sequenced from five clonal (isogenic) lines of rainbow trout individually in order to identify SNPs and estimate the number of duplicated genes. Two tissues, embryo and... -
Dynamic and systemic regulation occurs in the liver of rainbow trout (Oncorhy...
The hypoxia frequently occurs in natural aquatic systems and aquaculture environment due to the natural reasons and human factors such as extreme climate, high density farming,... -
Effects of salinity acclimation on expression of lncRNAs in scales of young r...
To assess whether bone homeostasis in O. mykiss scales is affected by salinity changes, we used the Illumina sequencing platform to detect the overall lncRNAs expression in O.... -
IGH repertoire of VHSV-vaccinated wild-type rainbow trout
Deep sequencing of IgHmu repertoire expressed in the trout spleen after vaccination against VHSV -
RNA-seq Analysis of Hepatic Response to Handling and Confinement Stress in Ra...
Fish under intensive rearing conditions experience various stress conditions, which have negative impacts on survival, growth and fillet quality. Identifying and characterizing... -
Oncorhynchus mykiss Transcriptome or Gene expression
Transcriptome analysis of the rainbow trout egg -
Social status-dependent regulation of the hepatic miRNAome in rainbow trout, ...
Purpose: Next-generation sequencing (NGS) of small RNAs allows transcriptome level analysis of the miRNAome. The goals of this study are to identify differentially regulated... -
Dual-organ transcriptomic analyses of rainbow trout through co-expression and...
Dual-organ transcriptomic analyses of rainbow trout through co-expression and machine learning algorithm under Ichthyophthirius multifiliis infection and recovery stage -
Evidence for conservation of a novel master sex-determining gene in salmonids
Master sex determining genes governing genetic sex determination have only been characterized in a very few non-mammalian vertebrates species. Teleost fishes represent the... -
NGS of liver tissues of Oncorhynchus mykiss under high temperature
Transcriptome sequencing of Oncorhynchus mykiss liver tissue under high temperature stress -
Rainbow trout in response to heat stress. miRNA transcriptome
The differential expression of miRNA in the rainbow trout liver under control and heat-treated conditions. -
circulating miRNA repertoires of plasma and ovarian fluid of rainbow trout (O...
The aim of this study was to characterize the repertoire of circulating miRNA in plasma and ovarian fluid of female rainbow trout according two dimensions: a time (reproduction... -
Assessing the toxicity of 17a-ethinylestradiol in rainbow trout using a four-...
There is an urgent demand for more efficient and ethical approaches in chemical risk assessment. Using 17a-ethinylestradiol (EE2) as a model compound, this study established a... -
RTgutGC cell transcriptome
The rainbow trout intestinal epithelial cell line (RTgutGC) is an in vitro model successfully in use for research. Bile acids, in addition to their classical role in lipid... -
Transcriptomic analysis of immunity in rainbow trout (Oncorhynchus mykiss) gi...
Purpose: a transcriptomic analysis was performed to extend our understanding on the immune response picture of rainbow trout exposed to I. multifiliis. Methods: Gill samples... -
Different gene expression profiles between normal and thermally selected stra...
A high-temperature selected (HT) strain of rainbow trout was established from the Donaldson (DS) strain by traditional selective breeding in Japan. The aim of this study is to... -
transcriptome of rainbow trout with extremely high and low carcass fat conten...
Objectives of this study were to characterize transcriptional profiling of rainbow trout tissue and identify the genes differentially expressed in rainbow trout with extremely... -
EpiRADseq sequencing in rainbow trout isogenic lines
We performed EpiRADseq sequencing in 7 doubled haploid (DH) parents and 36 pools of eyed-eggs (five eggs per pool), collected at the end of the temperature treatment (22 dpf):... -
RNA-seq of tissue panel samples from zebrafish (Danio rerio), medaka (Oryzias...
The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue... -
The comparative transcriptomic analysis for ovaries of triploid (3N) and dipl...
Triploidization is routinely applied in aquaculture of many commercially relevant fish species. The comparative transcriptomic analysis of ovaries of triploid (3N) and diploid...