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ICUUKseq_GNB
The emergence and spread of antimicrobial resistance (AMR) poses a significant challenge to the safe delivery of modern medical care. Multidrug-resistant organisms (MDRO) are... -
NSPHL HAI WGS raw reads
Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab -
NIH Clinical Center Carbapenem Resistant Bacteria: An Analysis of Hospital Pl...
Carbapenem Resistant Enterobacteriaceae strains including Klebsiella, Escherichia, Enterobacter, Citrobacter and Pantoea species isolated from patients and hospital environment. -
Genomic epidemiology and patterns of antimicrobial resistance of neonatal sep...
The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden... -
Genomic Catalog of Human Bladder Bacteria
We have developed a bladder-specific bacterial reference database consisting of 1134 genomes to aid in genomic, functional, and experimental analyses of the human bladder... -
Pakistan and United States ICU transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two... -
Hospital Microbiome Isolates
Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
The Genome sequencing and assembly of Klebsiella spp.
The Genome sequencing and assembly of Klebsiella spp. -
Enhanced detection system for hospital associated transmission (EDS-HAT)
Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and... -
Clinical metagenomics and metatranscriptomics for pathogen discovery
This project aims to develop DNA and RNA sequencing as tools for pathogen discovery in a clinical setting. -
Assorted bacteria with public health implications
Bacteria with public health implications due to virulence or antimicrobial resistance. Many of these bacteria were associated with outbreaks or have abnormal characteristics.... -
SC PHL pathogens isolated from wastewater samples that are not routine Genome...
Whole genome sequencing of wastewater isolates that do not fall into GenomeTrakr enteric or ESKAPE organisms. -
Pathogenic microorganism Genome sequencing
Genome sequencing of bacteria from State collection of pathogenic microorganisms Obolensk. Collection includes bacteria, fungi, and cell-lines. -
FDA-ARGOS is a database with public quality-controlled reference genomes for ...
<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to... -
NIHR_Global_Health_Research_Unit_on_Genomic_Surveillance_of_Antimicrobial_Res...
This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre... -
Bloodstream_surveillence_across_Africas
A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use... -
Staph aureus and gram negative isolates from blood culture Raw sequence reads
Isolation of pathogens directly from primary liquid blood culture infection diagnosis using WGS