Bacteria and yeast pathogens sequenced from human blood culture specimens

Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially impacts patient survival and prevention of antimicrobial resistance (AMR). This study demonstrates the potential use of Illumina short-read sequencing for identification and characterization of pathogens directly from blood culture specimens to facilitate timely initiation of appropriate antimicrobial therapies.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012445DDDD372A3D78E36A9E08C1E154D0B25CA638A
Metadata Access https://data.blue-cloud.org/api/collections/445DDDD372A3D78E36A9E08C1E154D0B25CA638A
Provenance
Instrument NextSeq 500; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor Public Health Agency of Canada
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-123.160W, 49.260S, -123.160E, 49.260N)
Temporal Point 2019-01-01T00:00:00Z