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Single-cell view of deep-sea microbial activity and intracommunity heterogeneity
Microbial activity in the deep sea is cumulatively important for global elemental cycling yet is difficult to quantify and characterize due to low cell density and slow growth.... -
ESP deployed about 1-2 km from catalina island. Sampled 1 to 2 times per day ...
"Short time-scale observations are valuable for understanding microbial influence on nutrient and energy cycles. We assessed dynamics in relative abundance and potential... -
Seasonal patterns of bacterial communities in the coastal brackish sediments ...
Coastal areas are critical in mitigating the impact of nutrients runoffs and downstream eutrophication of aquatic ecosystems. In the Gulf of Finland, the easternmost sub-basin... -
Quarterly time series of the microbial community in the San Pedro Channel
This study focuses on human impacts on the microbial community in the San Pedro Channel, California, USA. Surface water was collected from the Port of Los Angeles, Two Harbors... -
ToL_Meiofauna_R_D
We are testing new wet-lab protocols designed to sample long reads, linked reads, Hi-C libraries, and cDNA libraries, all from single meiofaunal (<1 mm) specimens. This data... -
A North Sea fish community was monitored via environmental DNA (eDNA) over th...
Analyses of environmental DNA has the potential to become an integrated tool in fish research and management. We performed a pilot study during the spring migration of fishes... -
Daily ocean time-series 2011 at San Pedro Ocean time-series
Phytoplankton (16S, 18S), Bacterial, Archaeal dynamics at SPOT at daily resolution -
The San Pedro Ocean time-series is a marine time-series started circa 1997. T...
The USC Microbial Observatory (Jed Fuhrman and David Caron, PIs) focuses on exploratory investigation of prokaryotic and unicellular eukaryotic diversity in the San Pedro... -
Prokaryotic communities in fruiting bodies of forest mushrooms
The aim of this study was to investigate the taxonomic composition of archaeal and bacterial communities that colonize the internal tissues of fruiting bodies of six different... -
These g23 major capsid protein gene sequences of T4-like-myoviruses are from ...
from a manuscript in prep: "Viruses are thought to influence microbial community structure by density-dependent, host-specific infection, which can be strain-specific.... -
Air column transect
air samples -
Effect of Elevated Pressure on Microbial Communities from the Gulf of Mexico
The Deepwater Horizon incident in 2010 released an unprecedented amount of petroleum hydrocarbons from the wellhead at 1500 meter depth, at which hydrostatic pressure is 15 MPa.... -
Metabarcoding of Amazonia
Metabarcoding data of soil and liter collected in four localities across Brazilian Amazonia, using 16S ando 18S markers. -
Data for release 2.0 of the Kew Tree of Life Explorer
The Kew Tree of Life Explorer allows users to explore evolutionary trees of life and to access the genomic data that underpin them. It is an output of the Plant and Fungal Trees... -
Diagnosing corneal infections in formalin fixed specimens using next generati...
DNA extracted from 16 cases of infectious keratitis, as well as 4 control corneas with no known infection, was sequenced to detect pathogenic and non-pathogenic organisms. All... -
Free_living_nematodes_from_individuals_to_communities__sequencing_individual_...
This study will generate genomes for individual marine and estuarine free-living nematodes within the Chromadorea and Enoplea. Single worms will be digested to generate long... -
Monthly time-series analysis of the marine microbial community from two size ...
This study examines monthly dynamics of marine microbial community between Jan-2005 and July-2018 from two size fractions (0.2-1.2 um and 1.2-80 um) at the San Pedro Ocean... -
Soil and groundwater microbial communities near livestock production farms
This study aimed to determine if biotic contaminants originating from pig production farms are disseminated into soil and groundwater microbial communities. We utilized 16S rRNA... -
mPCRseq SNP typing for noninvasive samples from tigers and queen conch
For monitoring wildlife, genotyping DNA from noninvasively collected samples is a widely used method. However, the degraded and low quantity of DNA often recovered from such... -
Water column methanotrophs in Wadden Sea and at cold seep in North Sea
The ocean’s methane emission to the atmosphere is dominated by continental shelves where cold seeps are globally common features. Seeps emit methane into the hydrosphere, but...