-
Life-forms, cell-sizes and ecological guilds of diatoms in European rivers
Diatoms are a very diverse group of microalgae that encompass about 100 000 taxa. This makes an excellent bioindicator especially of rivers. The majority of biotic indices based... -
Effect of fermentation conditions on the viability and acidification activity...
This dataset concerns the study of the effect of three fermentation parameters (temperature, pH and harvest time) on the viability (cell counts) and acidification activity... -
Viral metagenomic and fungal ITS metabarcoding data from complex pools of pla...
Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from... -
A catalog of genes and species of the human oral microbiota
A catalog of genes and species of the human oral microbiota -
Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal...
This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the... -
Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes flo...
Description des 3 fichiers excels : DREAL 2016_2017 liste taxonomique microscopie_moleculaire.xlsx : Fichier excel donnant les listes floristiques diatomées des campagnes 2016... -
Bioinformatic scripts used to analyze fungal metabarcoding data obtained from...
Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated... -
Different patterns in leaf-associated viromes and mycobiomes of wild plant po...
Supplementary methods and tables of Annexe 2: Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and natural ecosystems -
Annotation data about Multi Criteria Assessment Methods used in the agri-food...
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers. -
Code for the article "An epi-evolutionary model to predict spore-producing pa...
MATLAB codes for reproducing the simulations and main figures described in Fabre et al. 2022. An epi-evolutionary model for predicting the adaptation of spore-producing... -
Data from: Benefits and drawbacks of osmotic adjustment in Propionibacterium ...
Propionibacterium freudenreichii CIRM-BIA 129 and CIRM-BIA 1025 osmoadaptation in chemically defined medium (MMO) and osmoadaptation in the presence of glycine betaine (GB) were... -
OntoBiotope-BioNLP-OST
This version OntoBiotope-BioNLP-OST is a subset of the OntoBiotope ontology. created for the Bacteria Biotope task of BioNLP-OST 2019 competition. OntoBiotope is an ontology of... -
Bioinformatic scripts allowing the comparison of fungal metabarcoding pipelines
This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the... -
FirmiData: Annotation of ICEs and IMEs in 40 Firmicutes genomes
Manually curated reference annotation of Integrative Conjugative Elements (ICEs) and Integrative and Mobilizable Elements (IMEs) and other degenerated ICEs and IMEs in 40... -
Supporting data for "Milk metabolome reveals variations on enteric methane em...
Supplementary information containing figures, tables and tabulated data for "Milk metabolome reveals variations on enteric methane emissions from dairy cows fed a specific... -
Chromosomal rearrangements but no change of genes and transposable elements r...
We present a new de-novo whole-genome assembly obtained from a high quality DNA extraction and long-reads sequencing Nanopore technology obtained from an isolate sampled in the... -
Thonon Culture Collection -TCC- a freshwater microalgae collection
The main objectives of the TCC are to maintain cultures and uncultured samples of freshwater microalgae and to ensure their availability for : - Research projects (research... -
Data supplementing the article “Exploring the capacity of aquatic biofilms to...
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F.... -
Supplementary tables to manuscript: “Different patterns in leaf-associated vi...
Supplementary tables to manuscript in Chapter 3. -
2114 MAGs
TBD