-
CVM NARMS Retail Seafood Isolates
Whole genome sequencing of foodborne pathogens isolated from retail seafood as part of the US Food and Drug Administration surveillance project for NARMS -
Pakistan and United States ICU transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two... -
Integrated multi-omics reveals putative biomarkers of bacterial-fungal co-inf...
Transcriptomic analysis of Aspergillus fumigatus and Klebsiella pneumoniae grown as single and mixed biofilms. Overall design: RNA Sequencing was performed of Aspergillus... -
Human microbiome associated bacterial genomes
This project is designed to uncover antimicrobial drug leads from human symbionts. -
Hospital Microbiome Isolates
Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
The Genome sequencing and assembly of Klebsiella spp.
The Genome sequencing and assembly of Klebsiella spp. -
Enhanced detection system for hospital associated transmission (EDS-HAT)
Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and... -
NIHR_Global_Health_Research_Unit_on_Genomic_Surveillance_of_Antimicrobial_Res...
This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre... -
Gut Microbiota, Glucose, Lipid, and Water-Electrolyte Metabolism in Children ...
There is evidence that nonalcoholic fatty liver disease (NAFLD) is affected by gut microbiota, glucose,and lipid.However,the function of water-electrolyte metabolism remains... -
Klebsiella pneumoniae Genome sequencing and assembly
To study the cause of the carbapenemase-producing hypervirulent klebsiella pneumoniae -
GenomeTrakr WGS Validation Strain Set
This BioProject hosts genome sequence data for the FDA GenomeTrakr's validation strain set, which includes 32 bacterial species of foodborne pathogens and common contaminants.... -
Carbapenem and pan-aminoglycoside resistance bacteria in wastewater canalizat...
Wastewater has a predominant role for Public Health as source, reservoir and vehicle of antimicrobial resistance genes. This role is especially critical in developing countries... -
Metagenomic next-generation sequence data of Suspected Infected Pancreatic Ne...
42 blood samples and 22 peri-pancreatic specimens from 42 suspected infected pancreatic necrosis patients were collected to investigate the diagnostic performance of metagenomic... -
Endothelial Gene Expression in Regions of Defined Shear Exposure in the Porci...
The effect of hemodynamic shear stress on endothelial gene expression was investigated in the porcine iliac arteries. Computational fluid dynamics simulations identified three... -
Assorted bacteria with public health implications
Bacteria with public health implications due to virulence or antimicrobial resistance. Many of these bacteria were associated with outbreaks or have abnormal characteristics.... -
SC PHL pathogens isolated from wastewater samples that are not routine Genome...
Whole genome sequencing of wastewater isolates that do not fall into GenomeTrakr enteric or ESKAPE organisms. -
FDA-CFSAN: microbial foodborne pathogen research
Draft and complete genome sequences of foodborne bacterial pathogens collected for research purposes at the FDA's Center for Food Safety and Applied Nutrition.