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2114 MAGs
TBD -
Replication Data for "Large-scale multivariate dataset on the characterizatio...
Data provide detailed information on the diversity of bacterial communities present on 576 samples of raw pork or poultry sausages produced industrially in 2017. Bacterial... -
Grapevine-downy-mildew-genome.com: a web portal with genomic data and analysi...
http://grapevine-downy-mildew-genome.com/ is a web portal that provides public access to the reference genome of grapvine downy mildew (Plasmopara viticola, INRAE-PV221 strain).... -
BRC4Env, the Biological Resource Centre for the Environment
BRC4Env, the network of Biological Resource Centres for the Environment, aims at storing and providing environmental resources (biological material and associated data), in a... -
Hatching-data_Gautier-et-al_FIM
Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control). -
Data supplementing the article “Aquatic biofilms as passive environmental DNA...
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera,... -
OasYs_AF
Ici sont rassemblées les descriptions des dispositifs agroforestiers de l’expérimentation système OasYs, mise en œuvre à l’Unité Expérimentale Fourrages, Ruminants et... -
Extracellular vesicles produced by human and animal Staphylococcus aureus str...
The Extracellular Vesicle (EV) proteomes of five Staphylococcus aureus (S. aureus) strains originating from human, bovine, and ovine hosts were characterised thanks to... -
Bioinformatic and statistical scripts to analyze acorn mycobiota structure an...
This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn associated fungal communities (Fort et al., Maternal effects and environmental... -
Adaptation of Lactobacillus Bulgaricus CIRM-BIA1592 to cow milk versus soymil...
Lactobacillus Bulgaricus (CIRM-BIA1592) adaptation to cow milk versus soymilk environments was studied thanks to proteomics. Bacteria were harvested at the begining of... -
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as... -
Impact of feeding strategies on young rabbit and its gut microbiota
You will find all the datasets presented in the study of Paës et al, "Establishment of hindgut bacterial ecosystems and acquisition of microbial functions in the infant rabbit:... -
A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Dia...
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole,... -
Environmental conditions modulate the protein content and immunomodulatory ac...
Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory... -
Genome assembly and annotation of Plasmopara muralis, the downy mildew pathog...
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus... -
Statistical analysis scripts to analyze metabarcoding data of fungal communit...
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar... -
Protocole de dépôt en open-access des données de séquençage sur une plateform...
La qualité écologique des milieux aquatiques est contrôlée avec une large palette d’outils normalisés. Parmi ces outils, il y a les bioindicateurs, tels que les microalgues et... -
An updated catalog of genes and species of the pig gut microbiota
Dataset overview We built an updated catalog of 9.3M genes found in the pig gut microbiota. Co-abundant genes were binned in 1523 Metagenomic Species Pan-genomes (MSPs) for... -
A large panel of chicken cells are invaded in vivo by Salmonella Typhimurium ...
Poultry are the main source of human infection by Salmonella. As infected poultry are asymptomatic, the identification of infected poultry farms is difficult. Controlling animal... -
R-Syst: a network providing curated molecular databases and data analysis too...
R-Syst network deals about systematic and (meta) barcoding and provide curated molecular databases for species identification and provide tools for diagnosis and inventories....