Bioinformatic and statistical scripts to analyze acorn mycobiota structure and composition

DOI

This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn associated fungal communities (Fort et al., Maternal effects and environmental filtering shape seed fungal communities in oak trees. Submitted). Bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9.10 (Zhang et al., 2014). Raw sequences are available at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551388. Metadata and ASV tables are also provided allowing to use statistical analysis scripts without running the bioinformatic steps.

Identifier
DOI https://doi.org/10.15454/SM6OCR
Related Identifier https://hal.archives-ouvertes.fr/hal-02154443/
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/SM6OCR
Provenance
Creator Fort, Tania; Pauvert, Charlie; Zanne, Amy E.; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne
Publisher Recherche Data Gouv
Contributor Fort, Tania
Publication Year 2019
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Fort, Tania (INRA - Institut National de la Recherche Agronomique)
Representation
Resource Type Dataset
Format application/octet-stream; text/plain; type/x-r-syntax; text/tab-separated-values; text/csv
Size 49109; 6617; 28090; 26261; 15355; 12014; 4748; 2948623; 70820; 3686; 23478
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Geosciences; Life Sciences; Ecology; Silviculture; Microbial Ecology and Applied Microbiology