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Gene expression analysis between rainbow trout strains with different suscept...
Rainbow trout (Oncorhynchus mykiss) and other salmonids are piscivorous fish. In aquaculture, fish-based feed ingredients are rapidly becoming unsustainable due to increased... -
Oncorhynchus mykiss gut microbiome 16S rRNA amplicon sequencing
This project analyses the microbiome of the gastrointestinal tract of two rainbow trout lines exposed to different diets and stress conditions -
16s Rainbow trout (oncorhynchus mykiss) skin and gill microbiome samples
The goal of this study was to compare the skin and gill microbiome of rainbow trout (oncorhynchus mykiss) farmed in two facility types. The first is a traditional flow-through... -
Gene expression analysis comparing a selected strain of rainbow trout with su...
Through 8 generations of selection, our group has developed a strain of rainbow trout that exhibits high growth rates on an economically and environmentally sustainable all... -
A comparison between 454 RNA-seq and gene expression array for detecting diff...
The recent development of high throughput DNA provides an alternative new method for describing and quantifying transcriptome. During the analysis process, the user is... -
Oncorhynchus mykiss vertebral bone transcriptome
Normalized library was constructed from vertebrae (3 vertebrae/fish comprising ligaments and intervertebral tissue) for a pool of 10 selected individuals. Individuals were under... -
Oncorhynchus mykiss Transcriptome or Gene expression
To obtain differentially expressed genes and their functions by comparasion and statistical analysis -
Oncorhynchus mykiss Raw sequence reads
Pathogenesis of Vibrio eelii infection of the liver, gills and intestine of rainbow trout -
Environmental factors as the defining influence on intra-species variation of...
Environmental factors as the defining influence on intra-species variation of gastrointestinal microbiota in common carp and rainbow trout -
The transcriptome of rainbow trout skin after Flavobacterium columnare
Prevailing role of mucosal immunoglobulins and B cells in teleost skin immune responses to bacterial infection -
Microbial profiles of Alaskan rainbow trout from 16S rRNA amplicon data
Rainbow trout (Oncorhynchus mykiss) is a higly valued aquaculture species that belongs in the Salmonidae family, native only to the North Pacific. This study explores the... -
Maternal Dietary Choline Levels Cause Transcriptome Shift due to Genotype-by-...
The objective of this study was to identify metabolic regulatory mechanisms affected by choline availability in rainbow trout (Oncorhynchus mykiss) broodstock diets associated... -
Poultry by-products and insect meal as innovative ingredients for rainbow tro...
Fish consumption rose sharply in last decades, together with fishing levels, leading to dramatic consequences on marine habitats. Aquaculture represents a sustainable and secure... -
Ontogenetic changes in embryonic and brain gene expression in progeny produce...
RNAseq used to examine gene expression in divergent migrant and resident populations of rainbow trout that share a recent coancestry -
ChIPseq for Rainbow trout embryos
The European project AQUA-FAANG aims to improve understanding the genome function and usage of genotype-to-phenotype prediction in the six most important European farmed fish... -
Deciphering the role of the early antiviral response in the resistance to VHS...
The viral hemorrhagic septicemia virus (VHSV) is a major threat for salmonid farming and for wild fish populations worldwide. Previous studies have highlighted the importance of... -
Integrated analysis of immune parameters, miRNA-mRNA interaction, and immune ...
Rainbow trout (Oncorhynchus mykiss) is an important economical cold-water fish worldwide. However, infection with infectious hematopoietic necrosis virus (IHNV) has severely... -
NGS of gonad tissues of Oncorhynchus mykiss
next-generation sequencing of gonad tissues of diploid and triploid Oncorhynchus mykiss -
Transcriptomic response to selective breeding for fast growth in rainbow trou...
Genetic improvement for faster growth is a conventional approach to increase growth rates in aquaculture species, however the genetic and physiological factors regulating growth... -
Oncorhynchus mykiss trasncriptomic response to benzotriazole UV stabilizers
Rainbow trout were exposed chronically (28-d) through the diet to 0.05 µg/g of two benzotriazole UV stabilizers: 2-(2H-benzotriazol-2-yl)-4,6-bis(1-methyl-1-phenylethyl)phenol...